Zinc in PDB 9n8w: Intermembrane Lipid Transport Complex Letab From Escherichia Coli (Crosslinked, Composite Model Corresponding to Map 1)

The binding sites of Zinc atom in the Intermembrane Lipid Transport Complex Letab From Escherichia Coli (Crosslinked, Composite Model Corresponding to Map 1) (pdb code 9n8w). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Intermembrane Lipid Transport Complex Letab From Escherichia Coli (Crosslinked, Composite Model Corresponding to Map 1), PDB code: 9n8w:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Intermembrane Lipid Transport Complex Letab From Escherichia Coli (Crosslinked, Composite Model Corresponding to Map 1)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Intermembrane Lipid Transport Complex Letab From Escherichia Coli (Crosslinked, Composite Model Corresponding to Map 1) within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn501 b:76.9 occ:1.00 SG A:CYS34 2.3 49.5 1.0 SG A:CYS51 2.3 56.4 1.0 SG A:CYS31 2.3 50.1 1.0 SG A:CYS54 2.3 59.3 1.0 CB A:CYS31 3.1 50.1 1.0 CB A:CYS51 3.1 56.4 1.0 CB A:CYS54 3.6 59.3 1.0 CB A:CYS34 3.6 49.5 1.0 N A:CYS54 3.9 59.3 1.0 N A:CYS34 4.0 49.5 1.0 CA A:CYS54 4.3 59.3 1.0 CA A:CYS34 4.3 49.5 1.0 CB A:MET36 4.4 61.4 1.0 CA A:CYS31 4.6 50.1 1.0 CA A:CYS51 4.6 56.4 1.0 CB A:ARG53 4.6 60.2 1.0 CB A:GLN33 4.7 47.4 1.0 C A:GLN33 4.8 47.4 1.0 CB A:ALA56 4.9 54.5 1.0 C A:CYS34 4.9 49.5 1.0 C A:CYS54 5.0 59.3 1.0 C A:ARG53 5.0 60.2 1.0 N A:ARG53 5.0 60.2 1.0 N A:MET36 5.0 61.4 1.0

Zinc binding site 2 out of 2 in the Intermembrane Lipid Transport Complex Letab From Escherichia Coli (Crosslinked, Composite Model Corresponding to Map 1)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Intermembrane Lipid Transport Complex Letab From Escherichia Coli (Crosslinked, Composite Model Corresponding to Map 1) within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn502 b:98.6 occ:1.00 SG A:CYS251 2.3 68.0 1.0 SG A:CYS233 2.3 55.0 1.0 SG A:CYS236 2.3 57.3 1.0 SG A:CYS248 2.3 64.7 1.0 CB A:CYS233 3.0 55.0 1.0 CB A:CYS248 3.1 64.7 1.0 CB A:CYS236 3.8 57.3 1.0 CB A:CYS251 3.8 68.0 1.0 N A:CYS251 3.9 68.0 1.0 N A:CYS236 4.2 57.3 1.0 CB A:ARG250 4.4 60.4 1.0 CA A:CYS251 4.4 68.0 1.0 CA A:CYS233 4.5 55.0 1.0 O A:CYS251 4.5 68.0 1.0 CA A:CYS236 4.6 57.3 1.0 CG1 A:ILE253 4.6 59.5 1.0 CA A:CYS248 4.6 64.7 1.0 CD1 A:ILE253 4.6 59.5 1.0 C A:ARG250 4.7 60.4 1.0 CB A:PHE238 4.8 57.5 1.0 C A:CYS251 4.8 68.0 1.0 N A:ARG250 4.8 60.4 1.0 CA A:ARG250 4.9 60.4 1.0

C.C.Santarossa, Y.Li, S.Yousef, H.S.Hasdemir, C.C.Rodriguez, M.B.Haase, M.Baek, N.Coudray, J.G.Pavek, K.N.Focke, A.L.Silverberg, C.Bautista, J.Yeh, M.T.Marty, D.Baker, E.Tajkhorshid, D.C.Ekiert, G.Bhabha. Leta Defines A Structurally Distinct Transporter Family Involved in Lipid Trafficking. Biorxiv 2025.
ISSN: ISSN 2692-8205
PubMed: 40166208
DOI: 10.1101/2025.03.21.644421