Zinc in PDB 9mt2: Structure of the Machupo Virus Glycoprotein Complex

The binding sites of Zinc atom in the Structure of the Machupo Virus Glycoprotein Complex (pdb code 9mt2). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 6 binding sites of Zinc where determined in the Structure of the Machupo Virus Glycoprotein Complex, PDB code: 9mt2:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6;

Zinc binding site 1 out of 6 in the Structure of the Machupo Virus Glycoprotein Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of the Machupo Virus Glycoprotein Complex within 5.0Å range: probe atom residue distance (Å) B Occ C:Zn503 b:214.5 occ:1.00 ND1 C:HIS470 2.1 200.6 1.0 SG G:CYS57 2.3 161.4 1.0 SG C:CYS480 2.3 197.3 1.0 SG C:CYS478 2.3 187.3 1.0 CE1 C:HIS470 2.8 199.8 1.0 CG C:HIS470 3.0 199.6 1.0 CB C:CYS480 3.2 196.1 1.0 CB C:HIS470 3.5 200.2 1.0 CB G:CYS57 3.6 168.3 1.0 NE2 C:HIS470 3.9 198.6 1.0 CD2 C:HIS470 3.9 198.4 1.0 N C:CYS480 4.0 192.7 1.0 CB C:CYS478 4.1 191.8 1.0 CA C:HIS470 4.1 199.6 1.0 CA C:CYS480 4.2 194.8 1.0 N C:LYS471 4.8 200.7 1.0 N C:ARG479 4.9 189.6 1.0 CA G:CYS57 5.0 170.3 1.0

Zinc binding site 2 out of 6 in the Structure of the Machupo Virus Glycoprotein Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of the Machupo Virus Glycoprotein Complex within 5.0Å range: probe atom residue distance (Å) B Occ C:Zn504 b:193.3 occ:1.00 CB C:CYS466 1.7 183.8 1.0 CE1 C:HIS496 1.9 172.1 1.0 NE2 C:HIS496 2.0 173.4 1.0 NE2 C:HIS458 2.0 170.5 1.0 NE2 C:HIS460 2.0 172.4 1.0 SG C:CYS466 2.3 189.3 1.0 CD2 C:HIS458 2.8 166.8 1.0 CD2 C:HIS460 2.9 171.3 1.0 CE1 C:HIS460 3.0 168.9 1.0 CA C:CYS466 3.1 184.1 1.0 ND1 C:HIS496 3.2 166.6 1.0 CE1 C:HIS458 3.2 163.4 1.0 CD2 C:HIS496 3.4 169.5 1.0 N C:CYS466 3.7 186.0 1.0 CG C:HIS496 3.9 167.0 1.0 CG C:HIS458 4.0 154.6 1.0 CG C:HIS460 4.1 170.3 1.0 ND1 C:HIS460 4.1 169.3 1.0 C C:CYS466 4.2 185.3 1.0 ND1 C:HIS458 4.2 155.2 1.0 CD1 C:LEU468 4.7 178.2 1.0 CG C:LEU468 4.7 183.7 1.0 O C:CYS466 4.8 183.6 1.0 N C:PRO467 4.8 185.4 1.0 CD C:PRO467 4.9 182.5 1.0 C C:ALA465 5.0 187.0 1.0 O C:ARG459 5.0 169.3 1.0

Zinc binding site 3 out of 6 in the Structure of the Machupo Virus Glycoprotein Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Structure of the Machupo Virus Glycoprotein Complex within 5.0Å range: probe atom residue distance (Å) B Occ F:Zn503 b:181.4 occ:1.00 ND1 F:HIS470 2.1 213.2 1.0 SG F:CYS480 2.3 213.5 1.0 SG F:CYS478 2.3 214.6 1.0 SG A:CYS57 2.3 182.5 1.0 CG F:HIS470 3.0 215.5 1.0 CB F:CYS480 3.0 217.3 1.0 CE1 F:HIS470 3.1 211.5 1.0 CB F:HIS470 3.2 219.0 1.0 CB F:CYS478 3.3 220.3 1.0 N F:CYS480 3.9 220.7 1.0 CA F:HIS470 3.9 219.2 1.0 CB A:CYS57 4.0 176.4 1.0 CA F:CYS480 4.0 219.7 1.0 CD2 F:HIS470 4.1 213.3 1.0 NE2 F:HIS470 4.2 211.3 1.0 O A:SER56 4.2 170.8 1.0 N F:LYS471 4.5 222.7 1.0 CA A:CYS57 4.5 175.4 1.0 CA F:CYS478 4.6 221.9 1.0 C A:SER56 4.7 172.7 1.0 C F:HIS470 4.7 221.1 1.0 N F:ARG479 4.7 219.6 1.0 C F:CYS478 4.8 220.5 1.0 O F:LYS471 4.8 222.4 1.0 N A:CYS57 4.8 174.6 1.0 CD2 F:TYR483 4.8 217.1 1.0

Zinc binding site 4 out of 6 in the Structure of the Machupo Virus Glycoprotein Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Structure of the Machupo Virus Glycoprotein Complex within 5.0Å range: probe atom residue distance (Å) B Occ F:Zn504 b:210.6 occ:1.00 NE2 F:HIS458 2.0 176.3 1.0 NE2 F:HIS460 2.0 185.6 1.0 NE2 F:HIS496 2.0 184.2 1.0 SG F:CYS466 2.3 209.2 1.0 CD2 F:HIS458 2.7 171.4 1.0 CE1 F:HIS460 2.9 180.6 1.0 CD2 F:HIS496 2.9 178.6 1.0 CE1 F:HIS496 3.0 183.2 1.0 CE1 F:HIS458 3.0 173.0 1.0 CD2 F:HIS460 3.0 184.8 1.0 CB F:CYS466 3.6 207.3 1.0 CG F:HIS458 3.9 162.9 1.0 ND1 F:HIS458 4.0 166.7 1.0 ND1 F:HIS460 4.0 177.6 1.0 CG F:HIS496 4.1 178.1 1.0 ND1 F:HIS496 4.1 181.1 1.0 CG F:HIS460 4.1 181.2 1.0 CD1 F:LEU468 4.2 194.0 1.0 CG F:LEU468 4.3 200.2 1.0 CA F:CYS466 4.4 209.0 1.0 CD F:PRO467 4.7 203.9 1.0

Zinc binding site 5 out of 6 in the Structure of the Machupo Virus Glycoprotein Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Structure of the Machupo Virus Glycoprotein Complex within 5.0Å range: probe atom residue distance (Å) B Occ I:Zn503 b:173.3 occ:1.00 ND1 I:HIS470 2.1 190.3 1.0 CE1 I:HIS470 2.3 189.1 1.0 SG D:CYS57 2.3 160.5 1.0 SG I:CYS480 2.3 185.6 1.0 SG I:CYS478 2.3 188.4 1.0 CB I:CYS480 3.0 199.0 1.0 CG I:HIS470 3.3 192.0 1.0 NE2 I:HIS470 3.5 188.2 1.0 CB D:CYS57 3.9 156.3 1.0 CB I:CYS478 4.0 200.0 1.0 CD2 I:HIS470 4.0 189.8 1.0 N I:CYS480 4.1 200.2 1.0 CA I:CYS480 4.1 201.8 1.0 CB I:HIS470 4.2 195.3 1.0 CA I:HIS470 4.9 195.8 1.0

Zinc binding site 6 out of 6 in the Structure of the Machupo Virus Glycoprotein Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Structure of the Machupo Virus Glycoprotein Complex within 5.0Å range: probe atom residue distance (Å) B Occ I:Zn504 b:198.9 occ:1.00 CD2 I:HIS496 1.8 183.9 1.0 NE2 I:HIS460 2.2 178.5 1.0 NE2 I:HIS496 2.3 186.4 1.0 NE2 I:HIS458 2.3 167.3 1.0 SG I:CYS466 2.3 196.8 1.0 CE1 I:HIS460 2.6 175.6 1.0 CG I:HIS496 3.1 182.0 1.0 CE1 I:HIS458 3.2 163.8 1.0 CD2 I:HIS458 3.2 163.0 1.0 CB I:CYS466 3.4 189.9 1.0 CD2 I:HIS460 3.5 176.5 1.0 CE1 I:HIS496 3.6 184.4 1.0 ND1 I:HIS460 3.9 175.1 1.0 ND1 I:HIS496 3.9 183.3 1.0 CB I:HIS496 4.0 178.0 1.0 O I:LYS494 4.2 161.0 1.0 ND1 I:HIS458 4.3 157.6 1.0 CG I:HIS460 4.3 176.1 1.0 CG I:HIS458 4.3 154.4 1.0 CA I:CYS466 4.4 191.7 1.0 CD1 I:LEU468 4.5 180.7 1.0 N I:HIS496 4.6 177.8 1.0 ND1 I:HIS493 4.6 158.3 1.0 CG I:LEU468 4.8 184.5 1.0 CA I:HIS496 5.0 178.9 1.0

C.J.Mann, J.Abraham. Structure of the Machupo Virus Glycoprotein Complex To Be Published.