Zinc in PDB 9jht: Jumbo Phage Killer B

The structure of Jumbo Phage Killer B, PDB code: 9jht was solved by H.Wang, Y.Feng, X.L.Cao, L.L.Guan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.52 / 2.44
Space group	I 2 2 2
Cell size a, b, c (Å), α, β, γ (°)	83.26, 98.85, 199.43, 90, 90, 90
R / Rfree (%)	23.3 / 26.8

The binding sites of Zinc atom in the Jumbo Phage Killer B (pdb code 9jht). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Jumbo Phage Killer B, PDB code: 9jht:

Zinc binding site 1 out of 1 in the Jumbo Phage Killer B


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Jumbo Phage Killer B within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn401 b:118.7 occ:0.50 OE1 B:GLU135 2.8 73.4 1.0 OE2 A:GLU135 2.8 79.0 1.0 OE1 A:GLU135 3.0 63.0 1.0 CD A:GLU135 3.3 63.8 1.0 CD B:GLU135 3.9 76.4 1.0 OE2 B:GLU135 4.5 76.6 1.0 CG A:GLU135 4.8 59.5 1.0

L.Yuping, L.Guan, I.Becher, K.S.Makarova, X.Cao, S.Hareendranath, J.Guan, F.Stein, S.Yang, A.Boergel, K.Lapouge, K.Remans, D.Agard, M.Savitski, A.Typas, E.V.Koonin, Y.Feng, J.Bondy-Denomy. Jumbo Phage Killer Immune System Targets Early Infection of Nucleus-Forming Phages. Cell 2025.
ISSN: ISSN 1097-4172
PubMed: 40112800
DOI: 10.1016/J.CELL.2025.02.016