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Zinc in PDB 9j9t: Artificial Mononuclear Zn-Bound Metalloprotein 4 (M4:Zn)

Enzymatic activity of Artificial Mononuclear Zn-Bound Metalloprotein 4 (M4:Zn)

All present enzymatic activity of Artificial Mononuclear Zn-Bound Metalloprotein 4 (M4:Zn):
5.1.3.13;

Protein crystallography data

The structure of Artificial Mononuclear Zn-Bound Metalloprotein 4 (M4:Zn), PDB code: 9j9t was solved by W.J.Jeong, W.J.Song, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.30 / 2.66
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 117.43, 52.44, 81.84, 90, 114.56, 90
R / Rfree (%) 21.1 / 26

Zinc Binding Sites:

The binding sites of Zinc atom in the Artificial Mononuclear Zn-Bound Metalloprotein 4 (M4:Zn) (pdb code 9j9t). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Artificial Mononuclear Zn-Bound Metalloprotein 4 (M4:Zn), PDB code: 9j9t:

Zinc binding site 1 out of 1 in 9j9t

Go back to Zinc Binding Sites List in 9j9t
Zinc binding site 1 out of 1 in the Artificial Mononuclear Zn-Bound Metalloprotein 4 (M4:Zn)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Artificial Mononuclear Zn-Bound Metalloprotein 4 (M4:Zn) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn201

b:105.8
occ:1.00
CE1 B:HIS52 2.4 71.6 1.0
ND1 B:HIS130 2.5 43.5 1.0
NE2 B:HIS52 2.5 68.8 1.0
NE2 B:HIS78 2.6 83.0 1.0
CE1 B:HIS130 3.2 42.1 1.0
CE1 B:HIS78 3.4 84.1 1.0
CG B:HIS130 3.6 43.5 1.0
ND1 B:HIS52 3.6 71.9 1.0
CD2 B:HIS78 3.6 78.9 1.0
CD2 B:HIS52 3.8 69.8 1.0
CB B:HIS130 4.0 42.2 1.0
CG B:HIS52 4.3 62.4 1.0
NE2 B:HIS130 4.4 39.8 1.0
CD2 B:HIS130 4.6 40.3 1.0
ND1 B:HIS78 4.6 78.2 1.0
CG B:HIS78 4.7 71.5 1.0

Reference:

W.J.Jeong, W.J.Song. Metal-Installer: A Protein Designer Tool to Create Metal-Binding Sites To Be Published.
Page generated: Fri Aug 22 18:21:49 2025

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