Zinc in PDB 9j9r: Artificial Mononuclear Zn-Bound Metalloprotein 6 (M6:Zn)

All present enzymatic activity of Artificial Mononuclear Zn-Bound Metalloprotein 6 (M6:Zn):
5.1.3.13;

The structure of Artificial Mononuclear Zn-Bound Metalloprotein 6 (M6:Zn), PDB code: 9j9r was solved by W.J.Jeong, W.J.Song, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	28.93 / 2.60
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	52.456, 63.515, 71.491, 90.12, 89.76, 65.59
R / Rfree (%)	22.3 / 27.9

The binding sites of Zinc atom in the Artificial Mononuclear Zn-Bound Metalloprotein 6 (M6:Zn) (pdb code 9j9r). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Artificial Mononuclear Zn-Bound Metalloprotein 6 (M6:Zn), PDB code: 9j9r:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in the Artificial Mononuclear Zn-Bound Metalloprotein 6 (M6:Zn)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Artificial Mononuclear Zn-Bound Metalloprotein 6 (M6:Zn) within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn201 b:22.2 occ:1.00 ND1 A:HIS130 2.0 14.4 1.0 ND1 A:HIS54 2.3 25.6 1.0 O A:HOH301 2.3 8.8 1.0 CE1 A:HIS130 2.9 14.3 1.0 CG A:HIS130 3.0 15.8 1.0 CG A:HIS54 3.1 23.5 1.0 CB A:HIS54 3.3 22.8 1.0 CE1 A:HIS54 3.3 25.4 1.0 CB A:HIS130 3.4 17.6 1.0 NE2 A:HIS130 4.0 14.3 1.0 CD2 A:HIS130 4.0 16.0 1.0 CD2 A:HIS54 4.3 23.4 1.0 NE2 A:HIS54 4.3 24.0 1.0 CA A:HIS54 4.4 22.0 1.0 CA A:HIS130 4.4 18.9 1.0

Zinc binding site 2 out of 4 in the Artificial Mononuclear Zn-Bound Metalloprotein 6 (M6:Zn)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Artificial Mononuclear Zn-Bound Metalloprotein 6 (M6:Zn) within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn201 b:27.1 occ:1.00 ND1 B:HIS54 2.2 29.7 1.0 O B:HOH301 2.4 8.4 1.0 CD2 B:HIS130 2.5 22.9 1.0 CE1 B:HIS54 2.9 29.4 1.0 CG B:HIS54 3.1 29.7 1.0 CG B:HIS130 3.2 22.3 1.0 CB B:HIS130 3.5 22.8 1.0 CB B:HIS54 3.5 26.1 1.0 NE2 B:HIS130 3.6 23.8 1.0 NE2 B:HIS54 3.9 29.6 1.0 CD2 B:HIS54 4.0 29.6 1.0 ND1 B:HIS130 4.4 23.7 1.0 CA B:HIS130 4.4 22.5 1.0 CA B:HIS54 4.4 23.9 1.0 CE1 B:HIS130 4.5 24.9 1.0 N B:HIS130 5.0 24.6 1.0 O B:CYS129 5.0 24.9 1.0

Zinc binding site 3 out of 4 in the Artificial Mononuclear Zn-Bound Metalloprotein 6 (M6:Zn)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Artificial Mononuclear Zn-Bound Metalloprotein 6 (M6:Zn) within 5.0Å range: probe atom residue distance (Å) B Occ C:Zn201 b:19.9 occ:1.00 ND1 C:HIS130 2.0 19.0 1.0 O C:HOH301 2.1 7.0 1.0 ND1 C:HIS54 2.3 27.3 1.0 CE1 C:HIS130 2.9 18.6 1.0 CG C:HIS130 3.0 19.1 1.0 CE1 C:HIS54 3.2 27.5 1.0 CG C:HIS54 3.2 26.1 1.0 CB C:HIS130 3.4 20.5 1.0 CB C:HIS54 3.6 25.1 1.0 NE2 C:HIS130 3.9 18.4 1.0 CD2 C:HIS130 4.0 19.1 1.0 NE2 C:HIS54 4.2 26.5 1.0 CD2 C:HIS54 4.3 26.1 1.0 CA C:HIS130 4.3 23.1 1.0 CA C:HIS54 4.7 22.6 1.0 N C:HIS130 5.0 25.4 1.0

Zinc binding site 4 out of 4 in the Artificial Mononuclear Zn-Bound Metalloprotein 6 (M6:Zn)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Artificial Mononuclear Zn-Bound Metalloprotein 6 (M6:Zn) within 5.0Å range: probe atom residue distance (Å) B Occ D:Zn201 b:23.9 occ:1.00 ND1 D:HIS54 2.3 30.1 1.0 ND1 D:HIS130 2.3 22.9 1.0 O D:HOH301 2.5 5.5 1.0 CG D:HIS130 3.1 23.7 1.0 CE1 D:HIS130 3.1 24.5 1.0 CG D:HIS54 3.2 31.7 1.0 CE1 D:HIS54 3.2 29.5 1.0 CB D:HIS54 3.4 29.4 1.0 CB D:HIS130 3.5 23.8 1.0 NE2 D:HIS130 4.1 25.5 1.0 CD2 D:HIS130 4.1 24.6 1.0 CD2 D:HIS54 4.3 31.1 1.0 NE2 D:HIS54 4.3 29.4 1.0 CA D:HIS130 4.4 26.0 1.0 CA D:HIS54 4.5 26.4 1.0

W.J.Jeong, W.J.Song. Metal-Installer: A Protein Designer Tool to Create Metal-Binding Sites To Be Published.