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Zinc in PDB 9iuw: Structure of Alax-M Trans-Editing Enzyme From Pyrococcus Furiosus

Protein crystallography data

The structure of Structure of Alax-M Trans-Editing Enzyme From Pyrococcus Furiosus, PDB code: 9iuw was solved by K.I.Pawar, J.Gogoi, R.Sankaranarayanan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.77 / 1.78
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 113.23, 37.08, 59.07, 90, 103.56, 90
R / Rfree (%) 18.9 / 21.7

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure of Alax-M Trans-Editing Enzyme From Pyrococcus Furiosus (pdb code 9iuw). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Structure of Alax-M Trans-Editing Enzyme From Pyrococcus Furiosus, PDB code: 9iuw:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 9iuw

Go back to Zinc Binding Sites List in 9iuw
Zinc binding site 1 out of 2 in the Structure of Alax-M Trans-Editing Enzyme From Pyrococcus Furiosus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of Alax-M Trans-Editing Enzyme From Pyrococcus Furiosus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn301

b:18.5
occ:1.00
O A:HOH493 2.2 18.2 1.0
NE2 A:HIS100 2.2 12.9 1.0
NE2 A:HIS96 2.2 14.2 1.0
O A:HOH450 2.3 23.1 1.0
SG A:CYS179 2.3 26.3 1.0
CD2 A:HIS96 3.1 14.9 1.0
CD2 A:HIS100 3.2 14.9 1.0
CE1 A:HIS100 3.2 17.4 1.0
CB A:CYS179 3.3 32.4 1.0
CE1 A:HIS96 3.3 18.7 1.0
O A:HOH474 3.8 34.1 1.0
NE2 A:HIS183 4.1 14.6 1.0
O A:HOH444 4.2 22.7 1.0
CG A:HIS96 4.2 12.9 1.0
ND1 A:HIS96 4.3 13.8 1.0
ND1 A:HIS100 4.3 14.6 1.0
CG A:HIS100 4.4 13.6 1.0
CE1 A:HIS183 4.4 15.2 1.0
O A:GLY180 4.4 29.9 1.0
O A:GLY39 4.7 20.0 1.0
CA A:CYS179 4.7 29.6 1.0
O A:HOH406 4.8 25.7 1.0

Zinc binding site 2 out of 2 in 9iuw

Go back to Zinc Binding Sites List in 9iuw
Zinc binding site 2 out of 2 in the Structure of Alax-M Trans-Editing Enzyme From Pyrococcus Furiosus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of Alax-M Trans-Editing Enzyme From Pyrococcus Furiosus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn302

b:19.2
occ:1.00
OE1 A:GLU213 2.1 17.3 1.0
ND1 A:HIS192 2.2 14.4 1.0
O A:HOH498 2.8 21.6 1.0
CD A:GLU213 2.8 21.1 1.0
OE2 A:GLU213 2.8 24.3 1.0
CE1 A:HIS192 3.1 16.0 1.0
CG A:HIS192 3.3 14.7 1.0
CB A:HIS192 3.6 10.4 1.0
CG A:GLU213 4.3 20.8 1.0
NE2 A:HIS192 4.3 14.2 1.0
CD2 A:HIS192 4.4 15.4 1.0
N A:HIS192 4.6 13.8 1.0
CA A:HIS192 4.7 10.4 1.0
CB A:GLU213 4.8 17.9 1.0

Reference:

K.I.Pawar, J.Gogoi, R.Sankaranarayanan. Structure of Alax-M Trans-Editing Enzyme From Pyrococcus Furiosus To Be Published.
Page generated: Fri Aug 22 18:15:21 2025

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