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Zinc in PDB 9imm: Sars-Cov-2 Replication-Transcription Complex Has A Dimer Architecture (Local Drtc) in Post-Capping State

Enzymatic activity of Sars-Cov-2 Replication-Transcription Complex Has A Dimer Architecture (Local Drtc) in Post-Capping State

All present enzymatic activity of Sars-Cov-2 Replication-Transcription Complex Has A Dimer Architecture (Local Drtc) in Post-Capping State:
2.7.7.48; 2.7.7.50; 3.6.4.12; 3.6.4.13;

Zinc Binding Sites:

The binding sites of Zinc atom in the Sars-Cov-2 Replication-Transcription Complex Has A Dimer Architecture (Local Drtc) in Post-Capping State (pdb code 9imm). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 8 binding sites of Zinc where determined in the Sars-Cov-2 Replication-Transcription Complex Has A Dimer Architecture (Local Drtc) in Post-Capping State, PDB code: 9imm:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Zinc binding site 1 out of 8 in 9imm

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Zinc binding site 1 out of 8 in the Sars-Cov-2 Replication-Transcription Complex Has A Dimer Architecture (Local Drtc) in Post-Capping State


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Sars-Cov-2 Replication-Transcription Complex Has A Dimer Architecture (Local Drtc) in Post-Capping State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1001

b:54.8
occ:1.00
 ND1 A:HIS295 2.1 51.2 1.0
SG A:CYS310 2.3 47.8 1.0
SG A:CYS301 2.3 52.0 1.0
SG A:CYS306 2.3 53.7 1.0
CE1 A:HIS295 3.0 49.8 1.0
CG A:HIS295 3.1 48.9 1.0
O A:CYS306 3.4 52.6 1.0
CB A:CYS301 3.4 48.2 1.0
CB A:HIS295 3.4 49.0 1.0
CB A:CYS310 3.6 48.4 1.0
CA A:CYS301 3.7 47.6 1.0
CB A:CYS306 3.8 48.5 1.0
C A:CYS306 3.9 48.8 1.0
NE2 A:HIS295 4.2 46.4 1.0
N A:HIS295 4.2 49.8 1.0
CD2 A:HIS295 4.2 50.1 1.0
CA A:CYS306 4.3 48.4 1.0
CA A:HIS295 4.4 48.9 1.0
N A:CYS301 4.6 50.5 1.0
N A:ILE307 4.7 46.8 1.0
CA A:CYS310 4.8 48.1 1.0
N A:LEU302 4.8 48.9 1.0
N A:CYS310 4.8 52.2 1.0
O A:HIS295 4.8 52.4 1.0
C A:CYS301 4.9 49.2 1.0

Zinc binding site 2 out of 8 in 9imm

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Zinc binding site 2 out of 8 in the Sars-Cov-2 Replication-Transcription Complex Has A Dimer Architecture (Local Drtc) in Post-Capping State


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Sars-Cov-2 Replication-Transcription Complex Has A Dimer Architecture (Local Drtc) in Post-Capping State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1002

b:72.6
occ:1.00
 ND1 A:HIS642 2.1 52.3 1.0
SG A:CYS487 2.3 49.2 1.0
SG A:CYS645 2.3 39.8 1.0
SG A:CYS646 2.3 49.9 1.0
CE1 A:HIS642 3.0 53.5 1.0
CG A:HIS642 3.1 48.4 1.0
CB A:HIS642 3.4 47.4 1.0
CB A:CYS645 3.6 23.6 1.0
CB A:CYS646 3.7 49.8 1.0
CB A:CYS487 3.7 52.5 1.0
CZ A:PHE571 4.0 51.9 1.0
CE1 A:PHE571 4.0 56.7 1.0
N A:CYS487 4.0 48.2 1.0
N A:CYS646 4.1 44.7 1.0
C A:CYS645 4.1 28.3 1.0
NE2 A:HIS642 4.1 50.6 1.0
CD2 A:HIS642 4.2 49.3 1.0
CA A:CYS487 4.4 51.6 1.0
CA A:HIS642 4.4 46.2 1.0
CA A:CYS645 4.4 23.7 1.0
CA A:CYS646 4.4 46.3 1.0
O A:CYS645 4.5 28.0 1.0
NZ A:LYS532 4.6 52.8 1.0
C A:GLY486 4.7 49.0 1.0
CE2 A:PHE571 4.8 47.3 1.0
CD1 A:PHE571 4.8 52.2 1.0
O A:HIS642 4.9 49.3 1.0
CA A:GLY486 5.0 47.8 1.0
N A:CYS645 5.0 25.0 1.0

Zinc binding site 3 out of 8 in 9imm

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Zinc binding site 3 out of 8 in the Sars-Cov-2 Replication-Transcription Complex Has A Dimer Architecture (Local Drtc) in Post-Capping State


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Sars-Cov-2 Replication-Transcription Complex Has A Dimer Architecture (Local Drtc) in Post-Capping State within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Zn701

b:198.2
occ:1.00
 ND1 E:HIS39 2.1 107.8 1.0
NE2 E:HIS33 2.1 118.7 1.0
CB E:CYS19 2.1 122.1 1.0
SG E:CYS16 2.3 140.3 1.0
SG E:CYS19 2.3 124.4 1.0
CE1 E:HIS39 2.4 107.9 1.0
CD2 E:HIS33 3.0 117.8 1.0
CE1 E:HIS33 3.1 117.1 1.0
CA E:CYS19 3.3 119.7 1.0
CG E:HIS39 3.4 107.4 1.0
CB E:CYS16 3.4 137.7 1.0
NE2 E:HIS39 3.7 107.6 1.0
N E:CYS19 3.9 119.1 1.0
CB E:ALA110 4.1 123.5 1.0
CD2 E:HIS39 4.2 107.0 1.0
CG E:HIS33 4.2 116.4 1.0
CB E:HIS39 4.2 107.8 1.0
ND1 E:HIS33 4.2 116.7 1.0
C E:CYS19 4.6 118.4 1.0
CE2 E:PHE106 4.6 149.4 1.0
CZ E:PHE106 4.7 148.5 1.0
CA E:CYS16 4.8 136.3 1.0
CD E:PRO23 4.8 75.1 1.0
O E:CYS16 4.9 136.5 1.0
CG E:PRO23 4.9 73.6 1.0
C E:ALA18 5.0 88.9 1.0

Zinc binding site 4 out of 8 in 9imm

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Zinc binding site 4 out of 8 in the Sars-Cov-2 Replication-Transcription Complex Has A Dimer Architecture (Local Drtc) in Post-Capping State


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Sars-Cov-2 Replication-Transcription Complex Has A Dimer Architecture (Local Drtc) in Post-Capping State within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Zn702

b:164.2
occ:1.00
 SG E:CYS29 2.3 90.0 1.0
SG E:CYS26 2.3 59.4 1.0
SG E:CYS8 2.3 118.3 1.0
SG E:CYS5 2.3 108.4 1.0
CB E:CYS29 3.0 82.7 1.0
CB E:CYS26 3.2 56.9 1.0
CB E:CYS8 3.2 118.2 1.0
CB E:CYS5 3.8 105.6 1.0
N E:CYS8 3.9 115.4 1.0
N E:CYS26 3.9 58.4 1.0
OG E:SER100 4.1 89.2 1.0
CA E:CYS26 4.1 56.2 1.0
CA E:CYS8 4.2 117.8 1.0
CA E:CYS29 4.2 81.7 1.0
CB E:LEU7 4.2 69.6 1.0
CA E:GLY99 4.3 96.9 1.0
N E:CYS29 4.3 79.9 1.0
C E:LEU7 4.4 74.7 1.0
N E:GLY99 4.5 96.1 1.0
C E:GLY99 4.6 98.9 1.0
CA E:LEU7 4.7 73.2 1.0
N E:LEU7 4.8 76.8 1.0
C E:CYS26 4.8 55.9 1.0
O E:CYS26 4.9 57.4 1.0
N E:SER100 4.9 90.6 1.0

Zinc binding site 5 out of 8 in 9imm

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Zinc binding site 5 out of 8 in the Sars-Cov-2 Replication-Transcription Complex Has A Dimer Architecture (Local Drtc) in Post-Capping State


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Sars-Cov-2 Replication-Transcription Complex Has A Dimer Architecture (Local Drtc) in Post-Capping State within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Zn703

b:232.5
occ:1.00
 ND1 E:HIS75 2.0 127.4 1.0
SG E:CYS50 2.3 99.3 1.0
SG E:CYS55 2.3 104.5 1.0
SG E:CYS72 2.3 87.9 1.0
CE1 E:HIS75 2.6 127.8 1.0
CB E:CYS55 3.0 105.1 1.0
CB E:CYS72 3.1 82.7 1.0
CB E:CYS50 3.2 92.7 1.0
CG E:HIS75 3.2 126.4 1.0
N E:CYS72 3.8 82.6 1.0
NE2 E:HIS75 3.8 128.3 1.0
CB E:HIS75 3.9 125.0 1.0
CB E:ALA52 4.0 124.0 1.0
CA E:CYS72 4.1 80.7 1.0
CD2 E:HIS75 4.1 127.3 1.0
CG2 E:VAL57 4.5 73.1 1.0
CA E:CYS55 4.5 107.1 1.0
CB E:VAL57 4.6 72.8 1.0
CA E:CYS50 4.6 89.9 1.0
N E:HIS75 4.8 124.7 1.0
C E:CYS72 4.9 80.9 1.0
C E:CYS50 4.9 90.2 1.0
O E:CYS50 5.0 92.1 1.0
CA E:HIS75 5.0 125.9 1.0
N E:ALA52 5.0 119.1 1.0
C E:TYR71 5.0 82.2 1.0

Zinc binding site 6 out of 8 in 9imm

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Zinc binding site 6 out of 8 in the Sars-Cov-2 Replication-Transcription Complex Has A Dimer Architecture (Local Drtc) in Post-Capping State


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Sars-Cov-2 Replication-Transcription Complex Has A Dimer Architecture (Local Drtc) in Post-Capping State within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Zn701

b:189.7
occ:1.00
 ND1 F:HIS39 2.0 127.9 1.0
NE2 F:HIS33 2.1 118.6 1.0
SG F:CYS19 2.3 114.0 1.0
SG F:CYS16 2.3 46.6 1.0
CE1 F:HIS39 2.8 126.9 1.0
CD2 F:HIS33 2.9 118.5 1.0
CE1 F:HIS33 3.2 118.4 1.0
CG F:HIS39 3.2 128.2 1.0
CB F:CYS16 3.4 33.5 1.0
CB F:CYS19 3.5 112.4 1.0
CB F:HIS39 3.7 128.7 1.0
NE2 F:HIS39 4.0 127.5 1.0
CG F:HIS33 4.1 118.2 1.0
N F:CYS19 4.1 108.6 1.0
CB F:ALA110 4.2 109.0 1.0
ND1 F:HIS33 4.2 118.5 1.0
CD2 F:HIS39 4.2 127.9 1.0
CA F:CYS19 4.3 112.1 1.0
CA F:CYS16 4.8 36.4 1.0
C F:ALA18 4.9 76.0 1.0

Zinc binding site 7 out of 8 in 9imm

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Zinc binding site 7 out of 8 in the Sars-Cov-2 Replication-Transcription Complex Has A Dimer Architecture (Local Drtc) in Post-Capping State


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of Sars-Cov-2 Replication-Transcription Complex Has A Dimer Architecture (Local Drtc) in Post-Capping State within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Zn702

b:171.0
occ:1.00
 SG F:CYS26 2.3 82.8 1.0
SG F:CYS29 2.3 59.8 1.0
SG F:CYS8 2.3 87.2 1.0
SG F:CYS5 2.3 118.8 1.0
CB F:CYS8 3.0 84.8 1.0
CB F:CYS29 3.1 57.3 1.0
CB F:CYS26 3.2 80.6 1.0
N F:CYS8 3.8 80.9 1.0
CB F:CYS5 3.8 114.0 1.0
CB F:LEU7 3.9 72.0 1.0
N F:CYS26 3.9 78.4 1.0
CA F:CYS8 4.0 84.0 1.0
CA F:CYS26 4.1 80.1 1.0
CA F:CYS29 4.2 58.5 1.0
N F:CYS29 4.2 62.2 1.0
OG F:SER100 4.3 137.2 1.0
CA F:GLY99 4.4 88.3 1.0
N F:GLY99 4.4 87.9 1.0
C F:LEU7 4.4 70.7 1.0
CA F:LEU7 4.6 69.5 1.0
C F:GLY99 4.7 90.6 1.0
C F:CYS26 4.7 81.1 1.0
N F:LEU7 4.8 70.3 1.0
CG F:LEU7 4.9 72.2 1.0

Zinc binding site 8 out of 8 in 9imm

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Zinc binding site 8 out of 8 in the Sars-Cov-2 Replication-Transcription Complex Has A Dimer Architecture (Local Drtc) in Post-Capping State


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 8 of Sars-Cov-2 Replication-Transcription Complex Has A Dimer Architecture (Local Drtc) in Post-Capping State within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Zn703

b:207.4
occ:1.00
 ND1 F:HIS75 2.1 149.7 1.0
SG F:CYS55 2.3 153.5 1.0
SG F:CYS50 2.3 123.7 1.0
SG F:CYS72 2.3 119.3 1.0
CE1 F:HIS75 2.5 149.7 1.0
CB F:CYS55 3.0 152.1 1.0
CB F:CYS72 3.1 116.8 1.0
CG F:HIS75 3.4 149.5 1.0
CB F:CYS50 3.6 121.0 1.0
CB F:ALA52 3.6 111.4 1.0
NE2 F:HIS75 3.8 149.6 1.0
N F:CYS72 3.8 116.8 1.0
CA F:CYS72 4.1 117.1 1.0
CB F:HIS75 4.1 149.0 1.0
CD2 F:HIS75 4.2 149.6 1.0
CA F:CYS55 4.4 152.1 1.0
CG2 F:VAL57 4.7 121.2 1.0
CA F:ALA52 4.8 110.8 1.0
N F:HIS75 4.8 147.1 1.0
CB F:VAL57 4.8 121.6 1.0
N F:ALA52 4.9 111.6 1.0
C F:CYS72 4.9 119.1 1.0
CA F:CYS50 4.9 120.9 1.0
C F:TYR71 5.0 129.1 1.0

Reference:

L.M.Yan, Z.H.Rao, Z.Y.Lou. Structural Basis For the Concurrence of Template Recycling and Rna Capping in Sars-Cov-2 To Be Published.
Page generated: Tue Aug 26 22:02:43 2025

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