Zinc in PDB 9g9u: The Structure of Xynx, A NIF3 Family Protein From Geobacillus Proteiniphilus T-6

The structure of The Structure of Xynx, A NIF3 Family Protein From Geobacillus Proteiniphilus T-6, PDB code: 9g9u was solved by N.Hadad, S.Pomyalov, N.Lavid, Y.Shoham, G.Shoham, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	43.21 / 1.90
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	100.586, 58.301, 99.115, 90, 99.73, 90
R / Rfree (%)	19 / 21.9

The binding sites of Zinc atom in the The Structure of Xynx, A NIF3 Family Protein From Geobacillus Proteiniphilus T-6 (pdb code 9g9u). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the The Structure of Xynx, A NIF3 Family Protein From Geobacillus Proteiniphilus T-6, PDB code: 9g9u:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the The Structure of Xynx, A NIF3 Family Protein From Geobacillus Proteiniphilus T-6


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The Structure of Xynx, A NIF3 Family Protein From Geobacillus Proteiniphilus T-6 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn303 b:30.7 occ:1.00 OE2 A:GLU232 2.1 28.2 1.0 NE2 A:HIS63 2.1 33.2 1.0 NE2 A:HIS105 2.2 32.4 1.0 OE1 A:GLU232 2.4 27.5 1.0 CD A:GLU232 2.6 25.8 1.0 O A:HOH402 3.0 30.5 1.0 CE1 A:HIS105 3.0 30.7 1.0 CE1 A:HIS63 3.0 36.2 1.0 CD2 A:HIS63 3.1 33.3 1.0 CD2 A:HIS105 3.3 35.7 1.0 O A:HOH548 3.5 39.0 1.0 O A:HOH470 3.9 41.8 1.0 CG A:GLU232 4.1 24.8 1.0 ND1 A:HIS63 4.1 33.5 1.0 ND1 A:HIS105 4.2 28.7 1.0 CG A:HIS63 4.2 32.2 1.0 CG A:HIS105 4.3 38.5 1.0 CE1 A:HIS101 4.4 47.5 1.0 NE2 A:HIS101 4.5 52.3 1.0 CG1 A:ILE112 4.7 31.1 1.0 CA A:GLY177 4.7 24.4 1.0 ND1 A:HIS101 4.8 46.8 1.0 NE2 A:HIS228 4.9 22.1 1.0 CB A:GLU232 4.9 22.4 1.0 OE2 A:GLU64 4.9 41.2 1.0 O A:HOH478 4.9 54.5 1.0 CD1 A:ILE112 5.0 37.0 1.0

Zinc binding site 2 out of 2 in the The Structure of Xynx, A NIF3 Family Protein From Geobacillus Proteiniphilus T-6


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of The Structure of Xynx, A NIF3 Family Protein From Geobacillus Proteiniphilus T-6 within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn301 b:33.7 occ:1.00 OE2 B:GLU232 2.0 30.5 1.0 NE2 B:HIS63 2.1 36.4 1.0 NE2 B:HIS105 2.1 31.1 1.0 OE1 B:GLU232 2.3 31.0 1.0 CD B:GLU232 2.5 29.1 1.0 O B:HOH493 2.8 41.8 1.0 CE1 B:HIS105 2.9 34.5 1.0 CE1 B:HIS63 3.0 37.9 1.0 CD2 B:HIS63 3.1 33.6 1.0 CD2 B:HIS105 3.2 38.1 1.0 CE1 B:HIS101 3.9 43.6 1.0 CG B:GLU232 4.0 28.3 1.0 NE2 B:HIS101 4.1 47.4 1.0 ND1 B:HIS63 4.1 39.3 1.0 ND1 B:HIS105 4.1 37.7 1.0 CG B:HIS63 4.2 35.0 1.0 CG B:HIS105 4.3 37.8 1.0 ND1 B:HIS101 4.4 46.3 1.0 CG1 B:ILE112 4.5 34.5 1.0 CD2 B:HIS101 4.7 44.9 1.0 OE1 B:GLU64 4.8 45.0 1.0 CB B:GLU232 4.8 26.4 1.0 CD1 B:ILE112 4.9 33.0 1.0 CG2 B:ILE112 4.9 31.9 1.0 NE2 B:HIS228 4.9 26.7 1.0 CG B:HIS101 4.9 45.0 1.0 CA B:GLY177 4.9 28.6 1.0

N.Hadad, S.Pomyalov, N.Lavid, Y.Shoham, G.Shoham. The Structure of Xynx, A NIF3 Family Protein From Geobacillus Proteiniphilus T-6 To Be Published.