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Zinc in PDB 9g25: SNR30 Snornp - State 1 - UTP23-KRR1-DELTAC3

Zinc Binding Sites:

The binding sites of Zinc atom in the SNR30 Snornp - State 1 - UTP23-KRR1-DELTAC3 (pdb code 9g25). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the SNR30 Snornp - State 1 - UTP23-KRR1-DELTAC3, PDB code: 9g25:

Zinc binding site 1 out of 1 in 9g25

Go back to Zinc Binding Sites List in 9g25
Zinc binding site 1 out of 1 in the SNR30 Snornp - State 1 - UTP23-KRR1-DELTAC3


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of SNR30 Snornp - State 1 - UTP23-KRR1-DELTAC3 within 5.0Å range:
probe atom residue distance (Å) B Occ
K:Zn301

b:95.7
occ:1.00
ND1 K:HIS91 2.1 76.8 1.0
SG K:CYS102 2.3 72.0 1.0
SG K:CYS89 2.3 77.5 1.0
SG K:CYS64 2.3 75.0 1.0
CE1 K:HIS91 2.7 76.8 1.0
CG K:HIS91 3.1 76.8 1.0
CB K:CYS102 3.2 72.0 1.0
CB K:CYS64 3.4 75.0 1.0
CB K:CYS89 3.5 77.5 1.0
CB K:HIS91 3.8 76.8 1.0
NE2 K:HIS91 3.8 76.8 1.0
N K:CYS64 3.9 75.0 1.0
CD2 K:HIS91 4.0 76.8 1.0
CA K:CYS102 4.2 72.0 1.0
CA K:CYS64 4.3 75.0 1.0
OG1 K:THR62 4.5 71.4 1.0
CB K:THR62 4.5 71.4 1.0
CB K:GLN63 4.6 74.4 1.0
N K:GLN63 4.7 74.4 1.0
CB K:LYS97 4.9 75.5 1.0
C K:GLN63 4.9 74.4 1.0
C K:CYS102 4.9 72.0 1.0
CA K:CYS89 4.9 77.5 1.0
O K:CYS102 4.9 72.0 1.0
CA K:GLN63 5.0 74.4 1.0

Reference:

P.Fischer, M.Thoms, B.Lau, T.Denk, M.Kuvshinova, O.Berninghausen, D.Flemming, E.Hurt, R.Beckmann. H/Aca SNR30 Snornp Guides Independent 18S Rrna Subdomain Formation. Nat Commun V. 16 4720 2025.
ISSN: ESSN 2041-1723
PubMed: 40399280
DOI: 10.1038/S41467-025-59656-8
Page generated: Fri Aug 22 17:48:55 2025

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