Zinc in PDB 8yak: Cryo-Em Structure and Rational Engineering of A Novel Efficient Ochratoxin A-Detoxifying Amidohydrolase
Other elements in 8yak:
The structure of Cryo-Em Structure and Rational Engineering of A Novel Efficient Ochratoxin A-Detoxifying Amidohydrolase also contains other interesting chemical elements:
Zinc Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
16;
Binding sites:
The binding sites of Zinc atom in the Cryo-Em Structure and Rational Engineering of A Novel Efficient Ochratoxin A-Detoxifying Amidohydrolase
(pdb code 8yak). This binding sites where shown within
5.0 Angstroms radius around Zinc atom.
In total 16 binding sites of Zinc where determined in the
Cryo-Em Structure and Rational Engineering of A Novel Efficient Ochratoxin A-Detoxifying Amidohydrolase, PDB code: 8yak:
Jump to Zinc binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Zinc binding site 1 out
of 16 in 8yak
Go back to
Zinc Binding Sites List in 8yak
Zinc binding site 1 out
of 16 in the Cryo-Em Structure and Rational Engineering of A Novel Efficient Ochratoxin A-Detoxifying Amidohydrolase
![](/pictures/ZN/pdb/ya/8yak-ZN-sphere_01.jpg) Mono view
![](/pictures/ZN/pdb/ya/8yak-ZN-sphere_01_stereo.jpg) Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 1 of Cryo-Em Structure and Rational Engineering of A Novel Efficient Ochratoxin A-Detoxifying Amidohydrolase within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn501
b:103.0
occ:1.00
|
NE2
|
A:HIS85
|
2.3
|
49.6
|
1.0
|
NE2
|
A:HIS83
|
2.3
|
40.7
|
1.0
|
OQ1
|
A:KCX210
|
2.6
|
54.5
|
1.0
|
OQ2
|
A:KCX210
|
2.7
|
50.2
|
1.0
|
OD1
|
A:ASN344
|
3.0
|
50.4
|
1.0
|
CX
|
A:KCX210
|
3.0
|
52.3
|
1.0
|
CE1
|
A:HIS85
|
3.1
|
43.5
|
1.0
|
CE1
|
A:HIS83
|
3.1
|
40.0
|
1.0
|
CAA
|
A:97U503
|
3.1
|
58.4
|
1.0
|
CAB
|
A:97U503
|
3.4
|
55.9
|
1.0
|
CD2
|
A:HIS83
|
3.4
|
41.5
|
1.0
|
ZN
|
A:ZN502
|
3.4
|
90.9
|
1.0
|
ND2
|
A:ASN344
|
3.4
|
42.7
|
1.0
|
CD2
|
A:HIS85
|
3.4
|
56.4
|
1.0
|
CAN
|
A:97U503
|
3.4
|
62.0
|
1.0
|
CG
|
A:ASN344
|
3.5
|
43.8
|
1.0
|
CAF
|
A:97U503
|
3.5
|
61.0
|
1.0
|
HAB
|
A:97U503
|
3.7
|
58.2
|
1.0
|
N
|
A:97U503
|
3.9
|
58.0
|
1.0
|
CAC
|
A:97U503
|
3.9
|
59.8
|
1.0
|
OAX
|
A:97U503
|
4.0
|
65.3
|
1.0
|
CAE
|
A:97U503
|
4.0
|
59.3
|
1.0
|
H
|
A:97U503
|
4.0
|
58.4
|
1.0
|
OBB
|
A:97U503
|
4.1
|
60.7
|
1.0
|
CAD
|
A:97U503
|
4.2
|
62.5
|
1.0
|
ND1
|
A:HIS83
|
4.2
|
47.1
|
1.0
|
ND1
|
A:HIS85
|
4.3
|
52.3
|
1.0
|
NZ
|
A:KCX210
|
4.3
|
56.5
|
1.0
|
NE2
|
A:HIS271
|
4.4
|
47.4
|
1.0
|
CE1
|
A:HIS271
|
4.4
|
51.9
|
1.0
|
CG
|
A:HIS83
|
4.4
|
42.6
|
1.0
|
CG
|
A:HIS85
|
4.5
|
53.6
|
1.0
|
HAM
|
A:97U503
|
4.7
|
58.2
|
1.0
|
O
|
A:LEU128
|
4.7
|
57.2
|
1.0
|
CB
|
A:ASN344
|
4.8
|
41.9
|
1.0
|
H2
|
A:97U503
|
4.9
|
58.0
|
1.0
|
CA
|
A:97U503
|
4.9
|
57.0
|
1.0
|
CLA
|
A:97U503
|
4.9
|
78.8
|
1.0
|
CAJ
|
A:97U503
|
4.9
|
62.3
|
1.0
|
OAK
|
A:97U503
|
5.0
|
60.4
|
1.0
|
HAG
|
A:97U503
|
5.0
|
58.0
|
1.0
|
|
Zinc binding site 2 out
of 16 in 8yak
Go back to
Zinc Binding Sites List in 8yak
Zinc binding site 2 out
of 16 in the Cryo-Em Structure and Rational Engineering of A Novel Efficient Ochratoxin A-Detoxifying Amidohydrolase
![](/pictures/ZN/pdb/ya/8yak-ZN-sphere_02.jpg) Mono view
![](/pictures/ZN/pdb/ya/8yak-ZN-sphere_02_stereo.jpg) Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 2 of Cryo-Em Structure and Rational Engineering of A Novel Efficient Ochratoxin A-Detoxifying Amidohydrolase within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn502
b:90.9
occ:1.00
|
NE2
|
A:HIS271
|
1.9
|
47.4
|
1.0
|
OQ2
|
A:KCX210
|
2.1
|
50.2
|
1.0
|
ND1
|
A:HIS251
|
2.3
|
47.5
|
1.0
|
OAX
|
A:97U503
|
2.5
|
65.3
|
1.0
|
CX
|
A:KCX210
|
2.8
|
52.3
|
1.0
|
CD2
|
A:HIS271
|
2.9
|
48.6
|
1.0
|
CE1
|
A:HIS271
|
2.9
|
51.9
|
1.0
|
H
|
A:97U503
|
2.9
|
58.4
|
1.0
|
CAN
|
A:97U503
|
3.1
|
62.0
|
1.0
|
CE1
|
A:HIS251
|
3.2
|
46.5
|
1.0
|
HAM
|
A:97U503
|
3.2
|
58.2
|
1.0
|
CG
|
A:HIS251
|
3.3
|
43.3
|
1.0
|
ZN
|
A:ZN501
|
3.4
|
103.0
|
1.0
|
OQ1
|
A:KCX210
|
3.4
|
54.5
|
1.0
|
NZ
|
A:KCX210
|
3.5
|
56.5
|
1.0
|
HAB
|
A:97U503
|
3.5
|
58.2
|
1.0
|
N
|
A:97U503
|
3.6
|
58.0
|
1.0
|
CB
|
A:HIS251
|
3.6
|
39.1
|
1.0
|
CA
|
A:97U503
|
3.9
|
57.0
|
1.0
|
CAA
|
A:97U503
|
3.9
|
58.4
|
1.0
|
ND1
|
A:HIS271
|
3.9
|
47.0
|
1.0
|
CG
|
A:HIS271
|
4.0
|
48.4
|
1.0
|
CE1
|
A:HIS83
|
4.0
|
40.0
|
1.0
|
CAB
|
A:97U503
|
4.0
|
55.9
|
1.0
|
OD1
|
A:ASN344
|
4.3
|
50.4
|
1.0
|
NE2
|
A:HIS251
|
4.3
|
45.2
|
1.0
|
NE2
|
A:HIS83
|
4.4
|
40.7
|
1.0
|
CD2
|
A:HIS251
|
4.4
|
45.1
|
1.0
|
C
|
A:97U503
|
4.4
|
59.1
|
1.0
|
O
|
A:97U503
|
4.6
|
64.9
|
1.0
|
CA
|
A:HIS251
|
4.6
|
37.5
|
1.0
|
HD2
|
A:97U503
|
4.8
|
58.4
|
1.0
|
CB
|
A:GLU270
|
4.8
|
41.1
|
1.0
|
CE
|
A:KCX210
|
4.9
|
56.0
|
1.0
|
NE2
|
A:HIS163
|
4.9
|
42.1
|
1.0
|
|
Zinc binding site 3 out
of 16 in 8yak
Go back to
Zinc Binding Sites List in 8yak
Zinc binding site 3 out
of 16 in the Cryo-Em Structure and Rational Engineering of A Novel Efficient Ochratoxin A-Detoxifying Amidohydrolase
![](/pictures/ZN/pdb/ya/8yak-ZN-sphere_03.jpg) Mono view
![](/pictures/ZN/pdb/ya/8yak-ZN-sphere_03_stereo.jpg) Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 3 of Cryo-Em Structure and Rational Engineering of A Novel Efficient Ochratoxin A-Detoxifying Amidohydrolase within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Zn501
b:103.0
occ:1.00
|
NE2
|
B:HIS85
|
2.3
|
49.6
|
1.0
|
NE2
|
B:HIS83
|
2.3
|
40.7
|
1.0
|
OQ1
|
B:KCX210
|
2.6
|
54.5
|
1.0
|
OQ2
|
B:KCX210
|
2.7
|
50.2
|
1.0
|
OD1
|
B:ASN344
|
3.0
|
50.4
|
1.0
|
CX
|
B:KCX210
|
3.0
|
52.3
|
1.0
|
CE1
|
B:HIS85
|
3.1
|
43.5
|
1.0
|
CE1
|
B:HIS83
|
3.1
|
40.0
|
1.0
|
CAA
|
B:97U503
|
3.1
|
58.4
|
1.0
|
CAB
|
B:97U503
|
3.4
|
55.9
|
1.0
|
CD2
|
B:HIS83
|
3.4
|
41.5
|
1.0
|
ZN
|
B:ZN502
|
3.4
|
90.9
|
1.0
|
ND2
|
B:ASN344
|
3.4
|
42.7
|
1.0
|
CD2
|
B:HIS85
|
3.4
|
56.4
|
1.0
|
CAN
|
B:97U503
|
3.4
|
62.0
|
1.0
|
CG
|
B:ASN344
|
3.5
|
43.8
|
1.0
|
CAF
|
B:97U503
|
3.5
|
61.0
|
1.0
|
HAB
|
B:97U503
|
3.7
|
58.2
|
1.0
|
N
|
B:97U503
|
3.9
|
58.0
|
1.0
|
CAC
|
B:97U503
|
3.9
|
59.8
|
1.0
|
OAX
|
B:97U503
|
4.0
|
65.3
|
1.0
|
CAE
|
B:97U503
|
4.0
|
59.3
|
1.0
|
H
|
B:97U503
|
4.0
|
58.4
|
1.0
|
OBB
|
B:97U503
|
4.1
|
60.7
|
1.0
|
CAD
|
B:97U503
|
4.2
|
62.5
|
1.0
|
ND1
|
B:HIS83
|
4.2
|
47.1
|
1.0
|
ND1
|
B:HIS85
|
4.3
|
52.3
|
1.0
|
NZ
|
B:KCX210
|
4.3
|
56.5
|
1.0
|
NE2
|
B:HIS271
|
4.4
|
47.4
|
1.0
|
CE1
|
B:HIS271
|
4.4
|
51.9
|
1.0
|
CG
|
B:HIS83
|
4.4
|
42.6
|
1.0
|
CG
|
B:HIS85
|
4.5
|
53.6
|
1.0
|
HAM
|
B:97U503
|
4.7
|
58.2
|
1.0
|
O
|
B:LEU128
|
4.7
|
57.2
|
1.0
|
CB
|
B:ASN344
|
4.8
|
41.9
|
1.0
|
H2
|
B:97U503
|
4.9
|
58.0
|
1.0
|
CA
|
B:97U503
|
4.9
|
57.0
|
1.0
|
CLA
|
B:97U503
|
4.9
|
78.8
|
1.0
|
CAJ
|
B:97U503
|
4.9
|
62.3
|
1.0
|
OAK
|
B:97U503
|
5.0
|
60.4
|
1.0
|
HAG
|
B:97U503
|
5.0
|
58.0
|
1.0
|
|
Zinc binding site 4 out
of 16 in 8yak
Go back to
Zinc Binding Sites List in 8yak
Zinc binding site 4 out
of 16 in the Cryo-Em Structure and Rational Engineering of A Novel Efficient Ochratoxin A-Detoxifying Amidohydrolase
![](/pictures/ZN/pdb/ya/8yak-ZN-sphere_04.jpg) Mono view
![](/pictures/ZN/pdb/ya/8yak-ZN-sphere_04_stereo.jpg) Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 4 of Cryo-Em Structure and Rational Engineering of A Novel Efficient Ochratoxin A-Detoxifying Amidohydrolase within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Zn502
b:90.9
occ:1.00
|
NE2
|
B:HIS271
|
1.9
|
47.4
|
1.0
|
OQ2
|
B:KCX210
|
2.1
|
50.2
|
1.0
|
ND1
|
B:HIS251
|
2.3
|
47.5
|
1.0
|
OAX
|
B:97U503
|
2.5
|
65.3
|
1.0
|
CX
|
B:KCX210
|
2.8
|
52.3
|
1.0
|
CD2
|
B:HIS271
|
2.9
|
48.6
|
1.0
|
CE1
|
B:HIS271
|
2.9
|
51.9
|
1.0
|
H
|
B:97U503
|
2.9
|
58.4
|
1.0
|
CAN
|
B:97U503
|
3.1
|
62.0
|
1.0
|
CE1
|
B:HIS251
|
3.2
|
46.5
|
1.0
|
HAM
|
B:97U503
|
3.2
|
58.2
|
1.0
|
CG
|
B:HIS251
|
3.3
|
43.3
|
1.0
|
ZN
|
B:ZN501
|
3.4
|
103.0
|
1.0
|
OQ1
|
B:KCX210
|
3.4
|
54.5
|
1.0
|
NZ
|
B:KCX210
|
3.5
|
56.5
|
1.0
|
HAB
|
B:97U503
|
3.5
|
58.2
|
1.0
|
N
|
B:97U503
|
3.6
|
58.0
|
1.0
|
CB
|
B:HIS251
|
3.6
|
39.1
|
1.0
|
CA
|
B:97U503
|
3.9
|
57.0
|
1.0
|
CAA
|
B:97U503
|
3.9
|
58.4
|
1.0
|
ND1
|
B:HIS271
|
3.9
|
47.0
|
1.0
|
CG
|
B:HIS271
|
4.0
|
48.4
|
1.0
|
CE1
|
B:HIS83
|
4.0
|
40.0
|
1.0
|
CAB
|
B:97U503
|
4.0
|
55.9
|
1.0
|
OD1
|
B:ASN344
|
4.3
|
50.4
|
1.0
|
NE2
|
B:HIS251
|
4.3
|
45.2
|
1.0
|
NE2
|
B:HIS83
|
4.4
|
40.7
|
1.0
|
CD2
|
B:HIS251
|
4.4
|
45.1
|
1.0
|
C
|
B:97U503
|
4.4
|
59.1
|
1.0
|
O
|
B:97U503
|
4.6
|
64.9
|
1.0
|
CA
|
B:HIS251
|
4.6
|
37.5
|
1.0
|
HD2
|
B:97U503
|
4.8
|
58.4
|
1.0
|
CB
|
B:GLU270
|
4.8
|
41.1
|
1.0
|
CE
|
B:KCX210
|
4.9
|
56.0
|
1.0
|
NE2
|
B:HIS163
|
4.9
|
42.1
|
1.0
|
|
Zinc binding site 5 out
of 16 in 8yak
Go back to
Zinc Binding Sites List in 8yak
Zinc binding site 5 out
of 16 in the Cryo-Em Structure and Rational Engineering of A Novel Efficient Ochratoxin A-Detoxifying Amidohydrolase
![](/pictures/ZN/pdb/ya/8yak-ZN-sphere_05.jpg) Mono view
![](/pictures/ZN/pdb/ya/8yak-ZN-sphere_05_stereo.jpg) Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 5 of Cryo-Em Structure and Rational Engineering of A Novel Efficient Ochratoxin A-Detoxifying Amidohydrolase within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Zn501
b:103.0
occ:1.00
|
NE2
|
C:HIS85
|
2.3
|
49.6
|
1.0
|
NE2
|
C:HIS83
|
2.3
|
40.7
|
1.0
|
OQ1
|
C:KCX210
|
2.6
|
54.5
|
1.0
|
OQ2
|
C:KCX210
|
2.7
|
50.2
|
1.0
|
OD1
|
C:ASN344
|
3.0
|
50.4
|
1.0
|
CX
|
C:KCX210
|
3.0
|
52.3
|
1.0
|
CE1
|
C:HIS85
|
3.1
|
43.5
|
1.0
|
CE1
|
C:HIS83
|
3.1
|
40.0
|
1.0
|
CAA
|
C:97U503
|
3.1
|
58.4
|
1.0
|
CAB
|
C:97U503
|
3.4
|
55.9
|
1.0
|
CD2
|
C:HIS83
|
3.4
|
41.5
|
1.0
|
ZN
|
C:ZN502
|
3.4
|
90.9
|
1.0
|
ND2
|
C:ASN344
|
3.4
|
42.7
|
1.0
|
CD2
|
C:HIS85
|
3.4
|
56.4
|
1.0
|
CAN
|
C:97U503
|
3.4
|
62.0
|
1.0
|
CG
|
C:ASN344
|
3.5
|
43.8
|
1.0
|
CAF
|
C:97U503
|
3.5
|
61.0
|
1.0
|
HAB
|
C:97U503
|
3.7
|
58.2
|
1.0
|
N
|
C:97U503
|
3.9
|
58.0
|
1.0
|
CAC
|
C:97U503
|
3.9
|
59.8
|
1.0
|
OAX
|
C:97U503
|
4.0
|
65.3
|
1.0
|
CAE
|
C:97U503
|
4.0
|
59.3
|
1.0
|
H
|
C:97U503
|
4.0
|
58.4
|
1.0
|
OBB
|
C:97U503
|
4.1
|
60.7
|
1.0
|
CAD
|
C:97U503
|
4.2
|
62.5
|
1.0
|
ND1
|
C:HIS83
|
4.2
|
47.1
|
1.0
|
ND1
|
C:HIS85
|
4.3
|
52.3
|
1.0
|
NZ
|
C:KCX210
|
4.3
|
56.5
|
1.0
|
NE2
|
C:HIS271
|
4.4
|
47.4
|
1.0
|
CE1
|
C:HIS271
|
4.4
|
51.9
|
1.0
|
CG
|
C:HIS83
|
4.4
|
42.6
|
1.0
|
CG
|
C:HIS85
|
4.5
|
53.6
|
1.0
|
HAM
|
C:97U503
|
4.7
|
58.2
|
1.0
|
O
|
C:LEU128
|
4.7
|
57.2
|
1.0
|
CB
|
C:ASN344
|
4.8
|
41.9
|
1.0
|
H2
|
C:97U503
|
4.9
|
58.0
|
1.0
|
CA
|
C:97U503
|
4.9
|
57.0
|
1.0
|
CLA
|
C:97U503
|
4.9
|
78.8
|
1.0
|
CAJ
|
C:97U503
|
4.9
|
62.3
|
1.0
|
OAK
|
C:97U503
|
5.0
|
60.4
|
1.0
|
HAG
|
C:97U503
|
5.0
|
58.0
|
1.0
|
|
Zinc binding site 6 out
of 16 in 8yak
Go back to
Zinc Binding Sites List in 8yak
Zinc binding site 6 out
of 16 in the Cryo-Em Structure and Rational Engineering of A Novel Efficient Ochratoxin A-Detoxifying Amidohydrolase
![](/pictures/ZN/pdb/ya/8yak-ZN-sphere_06.jpg) Mono view
![](/pictures/ZN/pdb/ya/8yak-ZN-sphere_06_stereo.jpg) Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 6 of Cryo-Em Structure and Rational Engineering of A Novel Efficient Ochratoxin A-Detoxifying Amidohydrolase within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Zn502
b:90.9
occ:1.00
|
NE2
|
C:HIS271
|
1.9
|
47.4
|
1.0
|
OQ2
|
C:KCX210
|
2.1
|
50.2
|
1.0
|
ND1
|
C:HIS251
|
2.3
|
47.5
|
1.0
|
OAX
|
C:97U503
|
2.5
|
65.3
|
1.0
|
CX
|
C:KCX210
|
2.8
|
52.3
|
1.0
|
CD2
|
C:HIS271
|
2.9
|
48.6
|
1.0
|
CE1
|
C:HIS271
|
2.9
|
51.9
|
1.0
|
H
|
C:97U503
|
2.9
|
58.4
|
1.0
|
CAN
|
C:97U503
|
3.1
|
62.0
|
1.0
|
CE1
|
C:HIS251
|
3.2
|
46.5
|
1.0
|
HAM
|
C:97U503
|
3.2
|
58.2
|
1.0
|
CG
|
C:HIS251
|
3.3
|
43.3
|
1.0
|
ZN
|
C:ZN501
|
3.4
|
103.0
|
1.0
|
OQ1
|
C:KCX210
|
3.4
|
54.5
|
1.0
|
NZ
|
C:KCX210
|
3.5
|
56.5
|
1.0
|
HAB
|
C:97U503
|
3.5
|
58.2
|
1.0
|
N
|
C:97U503
|
3.6
|
58.0
|
1.0
|
CB
|
C:HIS251
|
3.6
|
39.1
|
1.0
|
CA
|
C:97U503
|
3.9
|
57.0
|
1.0
|
CAA
|
C:97U503
|
3.9
|
58.4
|
1.0
|
ND1
|
C:HIS271
|
3.9
|
47.0
|
1.0
|
CG
|
C:HIS271
|
4.0
|
48.4
|
1.0
|
CE1
|
C:HIS83
|
4.0
|
40.0
|
1.0
|
CAB
|
C:97U503
|
4.0
|
55.9
|
1.0
|
OD1
|
C:ASN344
|
4.3
|
50.4
|
1.0
|
NE2
|
C:HIS251
|
4.3
|
45.2
|
1.0
|
NE2
|
C:HIS83
|
4.4
|
40.7
|
1.0
|
CD2
|
C:HIS251
|
4.4
|
45.1
|
1.0
|
C
|
C:97U503
|
4.4
|
59.1
|
1.0
|
O
|
C:97U503
|
4.6
|
64.9
|
1.0
|
CA
|
C:HIS251
|
4.6
|
37.5
|
1.0
|
HD2
|
C:97U503
|
4.8
|
58.4
|
1.0
|
CB
|
C:GLU270
|
4.8
|
41.1
|
1.0
|
CE
|
C:KCX210
|
4.8
|
56.0
|
1.0
|
NE2
|
C:HIS163
|
4.9
|
42.1
|
1.0
|
|
Zinc binding site 7 out
of 16 in 8yak
Go back to
Zinc Binding Sites List in 8yak
Zinc binding site 7 out
of 16 in the Cryo-Em Structure and Rational Engineering of A Novel Efficient Ochratoxin A-Detoxifying Amidohydrolase
![](/pictures/ZN/pdb/ya/8yak-ZN-sphere_07.jpg) Mono view
![](/pictures/ZN/pdb/ya/8yak-ZN-sphere_07_stereo.jpg) Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 7 of Cryo-Em Structure and Rational Engineering of A Novel Efficient Ochratoxin A-Detoxifying Amidohydrolase within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Zn501
b:103.0
occ:1.00
|
NE2
|
D:HIS85
|
2.3
|
49.6
|
1.0
|
NE2
|
D:HIS83
|
2.3
|
40.7
|
1.0
|
OQ1
|
D:KCX210
|
2.6
|
54.5
|
1.0
|
OQ2
|
D:KCX210
|
2.7
|
50.2
|
1.0
|
OD1
|
D:ASN344
|
3.0
|
50.4
|
1.0
|
CX
|
D:KCX210
|
3.0
|
52.3
|
1.0
|
CE1
|
D:HIS85
|
3.1
|
43.5
|
1.0
|
CE1
|
D:HIS83
|
3.1
|
40.0
|
1.0
|
CAA
|
D:97U503
|
3.1
|
58.4
|
1.0
|
CAB
|
D:97U503
|
3.4
|
55.9
|
1.0
|
CD2
|
D:HIS83
|
3.4
|
41.5
|
1.0
|
ZN
|
D:ZN502
|
3.4
|
90.9
|
1.0
|
ND2
|
D:ASN344
|
3.4
|
42.7
|
1.0
|
CD2
|
D:HIS85
|
3.4
|
56.4
|
1.0
|
CAN
|
D:97U503
|
3.4
|
62.0
|
1.0
|
CG
|
D:ASN344
|
3.5
|
43.8
|
1.0
|
CAF
|
D:97U503
|
3.5
|
61.0
|
1.0
|
HAB
|
D:97U503
|
3.7
|
58.2
|
1.0
|
N
|
D:97U503
|
3.9
|
58.0
|
1.0
|
CAC
|
D:97U503
|
3.9
|
59.8
|
1.0
|
OAX
|
D:97U503
|
4.0
|
65.3
|
1.0
|
CAE
|
D:97U503
|
4.0
|
59.3
|
1.0
|
H
|
D:97U503
|
4.0
|
58.4
|
1.0
|
OBB
|
D:97U503
|
4.1
|
60.7
|
1.0
|
CAD
|
D:97U503
|
4.2
|
62.5
|
1.0
|
ND1
|
D:HIS83
|
4.2
|
47.1
|
1.0
|
ND1
|
D:HIS85
|
4.3
|
52.3
|
1.0
|
NZ
|
D:KCX210
|
4.3
|
56.5
|
1.0
|
NE2
|
D:HIS271
|
4.4
|
47.4
|
1.0
|
CE1
|
D:HIS271
|
4.4
|
51.9
|
1.0
|
CG
|
D:HIS83
|
4.4
|
42.6
|
1.0
|
CG
|
D:HIS85
|
4.5
|
53.6
|
1.0
|
HAM
|
D:97U503
|
4.7
|
58.2
|
1.0
|
O
|
D:LEU128
|
4.7
|
57.2
|
1.0
|
CB
|
D:ASN344
|
4.8
|
41.9
|
1.0
|
H2
|
D:97U503
|
4.9
|
58.0
|
1.0
|
CA
|
D:97U503
|
4.9
|
57.0
|
1.0
|
CLA
|
D:97U503
|
4.9
|
78.8
|
1.0
|
CAJ
|
D:97U503
|
4.9
|
62.3
|
1.0
|
OAK
|
D:97U503
|
5.0
|
60.4
|
1.0
|
HAG
|
D:97U503
|
5.0
|
58.0
|
1.0
|
|
Zinc binding site 8 out
of 16 in 8yak
Go back to
Zinc Binding Sites List in 8yak
Zinc binding site 8 out
of 16 in the Cryo-Em Structure and Rational Engineering of A Novel Efficient Ochratoxin A-Detoxifying Amidohydrolase
![](/pictures/ZN/pdb/ya/8yak-ZN-sphere_08.jpg) Mono view
![](/pictures/ZN/pdb/ya/8yak-ZN-sphere_08_stereo.jpg) Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 8 of Cryo-Em Structure and Rational Engineering of A Novel Efficient Ochratoxin A-Detoxifying Amidohydrolase within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Zn502
b:90.9
occ:1.00
|
NE2
|
D:HIS271
|
1.9
|
47.4
|
1.0
|
OQ2
|
D:KCX210
|
2.1
|
50.2
|
1.0
|
ND1
|
D:HIS251
|
2.3
|
47.5
|
1.0
|
OAX
|
D:97U503
|
2.5
|
65.3
|
1.0
|
CX
|
D:KCX210
|
2.8
|
52.3
|
1.0
|
CD2
|
D:HIS271
|
2.9
|
48.6
|
1.0
|
CE1
|
D:HIS271
|
2.9
|
51.9
|
1.0
|
H
|
D:97U503
|
2.9
|
58.4
|
1.0
|
CAN
|
D:97U503
|
3.1
|
62.0
|
1.0
|
CE1
|
D:HIS251
|
3.2
|
46.5
|
1.0
|
HAM
|
D:97U503
|
3.2
|
58.2
|
1.0
|
CG
|
D:HIS251
|
3.3
|
43.3
|
1.0
|
ZN
|
D:ZN501
|
3.4
|
103.0
|
1.0
|
OQ1
|
D:KCX210
|
3.4
|
54.5
|
1.0
|
NZ
|
D:KCX210
|
3.5
|
56.5
|
1.0
|
HAB
|
D:97U503
|
3.5
|
58.2
|
1.0
|
N
|
D:97U503
|
3.6
|
58.0
|
1.0
|
CB
|
D:HIS251
|
3.6
|
39.1
|
1.0
|
CA
|
D:97U503
|
3.9
|
57.0
|
1.0
|
CAA
|
D:97U503
|
3.9
|
58.4
|
1.0
|
ND1
|
D:HIS271
|
3.9
|
47.0
|
1.0
|
CG
|
D:HIS271
|
4.0
|
48.4
|
1.0
|
CE1
|
D:HIS83
|
4.0
|
40.0
|
1.0
|
CAB
|
D:97U503
|
4.0
|
55.9
|
1.0
|
OD1
|
D:ASN344
|
4.3
|
50.4
|
1.0
|
NE2
|
D:HIS251
|
4.3
|
45.2
|
1.0
|
NE2
|
D:HIS83
|
4.4
|
40.7
|
1.0
|
CD2
|
D:HIS251
|
4.4
|
45.1
|
1.0
|
C
|
D:97U503
|
4.4
|
59.1
|
1.0
|
O
|
D:97U503
|
4.6
|
64.9
|
1.0
|
CA
|
D:HIS251
|
4.6
|
37.5
|
1.0
|
HD2
|
D:97U503
|
4.8
|
58.4
|
1.0
|
CB
|
D:GLU270
|
4.8
|
41.1
|
1.0
|
CE
|
D:KCX210
|
4.8
|
56.0
|
1.0
|
NE2
|
D:HIS163
|
4.9
|
42.1
|
1.0
|
|
Zinc binding site 9 out
of 16 in 8yak
Go back to
Zinc Binding Sites List in 8yak
Zinc binding site 9 out
of 16 in the Cryo-Em Structure and Rational Engineering of A Novel Efficient Ochratoxin A-Detoxifying Amidohydrolase
![](/pictures/ZN/pdb/ya/8yak-ZN-sphere_09.jpg) Mono view
![](/pictures/ZN/pdb/ya/8yak-ZN-sphere_09_stereo.jpg) Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 9 of Cryo-Em Structure and Rational Engineering of A Novel Efficient Ochratoxin A-Detoxifying Amidohydrolase within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Zn501
b:103.0
occ:1.00
|
NE2
|
E:HIS85
|
2.3
|
49.6
|
1.0
|
NE2
|
E:HIS83
|
2.3
|
40.7
|
1.0
|
OQ1
|
E:KCX210
|
2.6
|
54.5
|
1.0
|
OQ2
|
E:KCX210
|
2.7
|
50.2
|
1.0
|
OD1
|
E:ASN344
|
3.0
|
50.4
|
1.0
|
CX
|
E:KCX210
|
3.0
|
52.3
|
1.0
|
CE1
|
E:HIS85
|
3.1
|
43.5
|
1.0
|
CE1
|
E:HIS83
|
3.1
|
40.0
|
1.0
|
CAA
|
E:97U503
|
3.1
|
58.4
|
1.0
|
CAB
|
E:97U503
|
3.4
|
55.9
|
1.0
|
CD2
|
E:HIS83
|
3.4
|
41.5
|
1.0
|
ZN
|
E:ZN502
|
3.4
|
90.9
|
1.0
|
ND2
|
E:ASN344
|
3.4
|
42.7
|
1.0
|
CD2
|
E:HIS85
|
3.4
|
56.4
|
1.0
|
CAN
|
E:97U503
|
3.4
|
62.0
|
1.0
|
CG
|
E:ASN344
|
3.5
|
43.8
|
1.0
|
CAF
|
E:97U503
|
3.5
|
61.0
|
1.0
|
HAB
|
E:97U503
|
3.7
|
58.2
|
1.0
|
N
|
E:97U503
|
3.9
|
58.0
|
1.0
|
CAC
|
E:97U503
|
3.9
|
59.8
|
1.0
|
OAX
|
E:97U503
|
4.0
|
65.3
|
1.0
|
CAE
|
E:97U503
|
4.0
|
59.3
|
1.0
|
H
|
E:97U503
|
4.0
|
58.4
|
1.0
|
OBB
|
E:97U503
|
4.1
|
60.7
|
1.0
|
CAD
|
E:97U503
|
4.2
|
62.5
|
1.0
|
ND1
|
E:HIS83
|
4.2
|
47.1
|
1.0
|
ND1
|
E:HIS85
|
4.3
|
52.3
|
1.0
|
NZ
|
E:KCX210
|
4.3
|
56.5
|
1.0
|
NE2
|
E:HIS271
|
4.4
|
47.4
|
1.0
|
CE1
|
E:HIS271
|
4.4
|
51.9
|
1.0
|
CG
|
E:HIS83
|
4.4
|
42.6
|
1.0
|
CG
|
E:HIS85
|
4.5
|
53.6
|
1.0
|
HAM
|
E:97U503
|
4.7
|
58.2
|
1.0
|
O
|
E:LEU128
|
4.7
|
57.2
|
1.0
|
CB
|
E:ASN344
|
4.8
|
41.9
|
1.0
|
H2
|
E:97U503
|
4.9
|
58.0
|
1.0
|
CA
|
E:97U503
|
4.9
|
57.0
|
1.0
|
CLA
|
E:97U503
|
4.9
|
78.8
|
1.0
|
CAJ
|
E:97U503
|
4.9
|
62.3
|
1.0
|
OAK
|
E:97U503
|
5.0
|
60.4
|
1.0
|
HAG
|
E:97U503
|
5.0
|
58.0
|
1.0
|
|
Zinc binding site 10 out
of 16 in 8yak
Go back to
Zinc Binding Sites List in 8yak
Zinc binding site 10 out
of 16 in the Cryo-Em Structure and Rational Engineering of A Novel Efficient Ochratoxin A-Detoxifying Amidohydrolase
![](/pictures/ZN/pdb/ya/8yak-ZN-sphere_10.jpg) Mono view
![](/pictures/ZN/pdb/ya/8yak-ZN-sphere_10_stereo.jpg) Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 10 of Cryo-Em Structure and Rational Engineering of A Novel Efficient Ochratoxin A-Detoxifying Amidohydrolase within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Zn502
b:90.9
occ:1.00
|
NE2
|
E:HIS271
|
1.9
|
47.4
|
1.0
|
OQ2
|
E:KCX210
|
2.1
|
50.2
|
1.0
|
ND1
|
E:HIS251
|
2.3
|
47.5
|
1.0
|
OAX
|
E:97U503
|
2.5
|
65.3
|
1.0
|
CX
|
E:KCX210
|
2.8
|
52.3
|
1.0
|
CD2
|
E:HIS271
|
2.9
|
48.6
|
1.0
|
CE1
|
E:HIS271
|
2.9
|
51.9
|
1.0
|
H
|
E:97U503
|
2.9
|
58.4
|
1.0
|
CAN
|
E:97U503
|
3.1
|
62.0
|
1.0
|
CE1
|
E:HIS251
|
3.2
|
46.5
|
1.0
|
HAM
|
E:97U503
|
3.2
|
58.2
|
1.0
|
CG
|
E:HIS251
|
3.3
|
43.3
|
1.0
|
ZN
|
E:ZN501
|
3.4
|
103.0
|
1.0
|
OQ1
|
E:KCX210
|
3.4
|
54.5
|
1.0
|
NZ
|
E:KCX210
|
3.5
|
56.5
|
1.0
|
HAB
|
E:97U503
|
3.5
|
58.2
|
1.0
|
N
|
E:97U503
|
3.6
|
58.0
|
1.0
|
CB
|
E:HIS251
|
3.6
|
39.1
|
1.0
|
CA
|
E:97U503
|
3.9
|
57.0
|
1.0
|
CAA
|
E:97U503
|
3.9
|
58.4
|
1.0
|
ND1
|
E:HIS271
|
3.9
|
47.0
|
1.0
|
CG
|
E:HIS271
|
4.0
|
48.4
|
1.0
|
CE1
|
E:HIS83
|
4.0
|
40.0
|
1.0
|
CAB
|
E:97U503
|
4.0
|
55.9
|
1.0
|
OD1
|
E:ASN344
|
4.3
|
50.4
|
1.0
|
NE2
|
E:HIS251
|
4.3
|
45.2
|
1.0
|
NE2
|
E:HIS83
|
4.4
|
40.7
|
1.0
|
CD2
|
E:HIS251
|
4.4
|
45.1
|
1.0
|
C
|
E:97U503
|
4.4
|
59.1
|
1.0
|
O
|
E:97U503
|
4.6
|
64.9
|
1.0
|
CA
|
E:HIS251
|
4.6
|
37.5
|
1.0
|
HD2
|
E:97U503
|
4.8
|
58.4
|
1.0
|
CB
|
E:GLU270
|
4.8
|
41.1
|
1.0
|
CE
|
E:KCX210
|
4.8
|
56.0
|
1.0
|
NE2
|
E:HIS163
|
4.9
|
42.1
|
1.0
|
|
Reference:
Y.Hu,
L.Dai,
Y.Xu,
D.Niu,
X.Yang,
Z.Xie,
P.Shen,
X.Li,
H.Li,
L.Zhang,
J.Min,
R.T.Guo,
C.C.Chen.
Functional Characterization and Structural Basis of An Efficient Ochratoxin A-Degrading Amidohydrolase. Int.J.Biol.Macromol. V. 278 34831 2024.
ISSN: ISSN 0141-8130
PubMed: 39163957
DOI: 10.1016/J.IJBIOMAC.2024.134831
Page generated: Sun Feb 9 00:56:46 2025
|