Zinc in PDB 8y9c: De Novo Design Mini-Binder in Complex with TCDB4

The binding sites of Zinc atom in the De Novo Design Mini-Binder in Complex with TCDB4 (pdb code 8y9c). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the De Novo Design Mini-Binder in Complex with TCDB4, PDB code: 8y9c:

Zinc binding site 1 out of 1 in the De Novo Design Mini-Binder in Complex with TCDB4


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of De Novo Design Mini-Binder in Complex with TCDB4 within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn3001 b:47.6 occ:1.00 CE1 B:HIS758 1.8 22.0 1.0 OD1 B:ASP547 2.3 33.9 1.0 SG B:CYS699 2.3 14.1 1.0 ND1 B:HIS654 2.3 16.0 1.0 NE2 B:HIS758 2.3 22.0 1.0 CE1 B:HIS654 3.0 16.0 1.0 ND1 B:HIS758 3.0 22.0 1.0 CG B:ASP547 3.2 33.9 1.0 CB B:CYS699 3.3 14.1 1.0 OD2 B:ASP547 3.5 33.9 1.0 CG B:HIS654 3.5 16.0 1.0 CD2 B:HIS758 3.6 22.0 1.0 CG B:HIS758 3.9 22.0 1.0 CB B:HIS654 4.0 16.0 1.0 NE2 B:HIS654 4.2 16.0 1.0 CG B:GLU546 4.2 31.3 1.0 CD1 B:LEU550 4.4 31.7 1.0 CD B:GLU546 4.5 31.3 1.0 CD2 B:HIS654 4.5 16.0 1.0 CA B:CYS699 4.6 14.1 1.0 CB B:ASP547 4.6 33.9 1.0 N B:CYS699 4.7 14.1 1.0 OE1 B:GLU546 4.7 31.3 1.0 CB B:GLU546 4.8 31.3 1.0 CA B:HIS654 4.8 16.0 1.0 N B:ASP547 4.9 33.9 1.0 OE2 B:GLU546 5.0 31.3 1.0 CA B:ASP547 5.0 33.9 1.0

X.C.Lv, P.L.Lu. De Novo Design Mini-Binder in Complex with TCDB4 To Be Published.