Zinc in PDB 8t3y: Structure of BRE1-Nucleosome Complex - STATE1

Enzymatic activity of Structure of BRE1-Nucleosome Complex - STATE1

All present enzymatic activity of Structure of BRE1-Nucleosome Complex - STATE1:
2.3.2.27;

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure of BRE1-Nucleosome Complex - STATE1 (pdb code 8t3y). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Structure of BRE1-Nucleosome Complex - STATE1, PDB code: 8t3y:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in 8t3y

Go back to Zinc Binding Sites List in 8t3y
Zinc binding site 1 out of 4 in the Structure of BRE1-Nucleosome Complex - STATE1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of BRE1-Nucleosome Complex - STATE1 within 5.0Å range:
probe atom residue distance (Å) B Occ
K:Zn801

b:153.9
occ:1.00
 ND1 K:HIS665 2.1 138.4 1.0
SG K:CYS683 2.3 119.4 1.0
SG K:CYS686 2.3 125.6 1.0
SG K:CYS663 2.3 139.7 1.0
CE1 K:HIS665 2.5 138.4 1.0
CB K:CYS663 2.7 139.7 1.0
CB K:CYS686 3.1 125.6 1.0
OG1 K:THR685 3.1 124.4 1.0
CB K:CYS683 3.3 119.4 1.0
CG K:HIS665 3.3 138.4 1.0
N K:CYS686 3.5 125.6 1.0
NE2 K:HIS665 3.7 138.4 1.0
CA K:CYS686 3.8 125.6 1.0
CB K:HIS665 4.0 138.4 1.0
CD2 K:HIS665 4.1 138.4 1.0
CA K:CYS663 4.2 139.7 1.0
CB K:THR685 4.4 124.4 1.0
C K:CYS686 4.5 125.6 1.0
C K:THR685 4.6 124.4 1.0
C K:CYS663 4.7 139.7 1.0
CA K:CYS683 4.7 119.4 1.0
N K:ASN687 4.7 119.7 1.0
O K:CYS663 4.9 139.7 1.0
N K:THR685 4.9 124.4 1.0
CA K:THR685 4.9 124.4 1.0
N K:HIS665 4.9 138.4 1.0
N K:CYS663 5.0 139.7 1.0

Zinc binding site 2 out of 4 in 8t3y

Go back to Zinc Binding Sites List in 8t3y
Zinc binding site 2 out of 4 in the Structure of BRE1-Nucleosome Complex - STATE1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of BRE1-Nucleosome Complex - STATE1 within 5.0Å range:
probe atom residue distance (Å) B Occ
K:Zn802

b:174.2
occ:1.00
 SG K:CYS668 2.3 143.2 1.0
SG K:CYS671 2.3 136.3 1.0
SG K:CYS651 2.3 163.4 1.0
SG K:CYS648 2.3 162.6 1.0
CB K:CYS648 2.6 162.6 1.0
CB K:CYS651 2.8 163.4 1.0
CB K:CYS671 3.1 136.3 1.0
CB K:CYS668 3.4 143.2 1.0
N K:CYS651 3.4 163.4 1.0
CA K:CYS651 3.7 163.4 1.0
CA K:CYS648 4.0 162.6 1.0
N K:CYS671 4.2 136.3 1.0
CA K:CYS671 4.2 136.3 1.0
N K:CYS668 4.3 143.2 1.0
CA K:CYS668 4.4 143.2 1.0
C K:CYS648 4.4 162.6 1.0
C K:LEU650 4.5 157.7 1.0
O K:CYS648 4.5 162.6 1.0
CB K:LEU650 4.5 157.7 1.0
C K:CYS651 4.7 163.4 1.0
N K:CYS648 4.8 162.6 1.0
N K:SER652 4.8 164.7 1.0
N K:LEU650 4.8 157.7 1.0
CA K:LEU650 4.9 157.7 1.0
O K:CYS668 4.9 143.2 1.0
C K:CYS668 4.9 143.2 1.0

Zinc binding site 3 out of 4 in 8t3y

Go back to Zinc Binding Sites List in 8t3y
Zinc binding site 3 out of 4 in the Structure of BRE1-Nucleosome Complex - STATE1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Structure of BRE1-Nucleosome Complex - STATE1 within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Zn801

b:208.9
occ:1.00
 CE1 L:HIS665 1.9 173.8 1.0
ND1 L:HIS665 2.3 173.8 1.0
SG L:CYS663 2.3 172.8 1.0
OG1 L:THR685 2.9 182.4 1.0
SG L:CYS683 2.9 186.2 1.0
SG L:CYS686 2.9 190.4 1.0
NE2 L:HIS665 3.1 173.8 1.0
CB L:CYS686 3.1 190.4 1.0
CB L:CYS663 3.3 172.8 1.0
N L:CYS686 3.4 190.4 1.0
CG L:HIS665 3.5 173.8 1.0
CB L:CYS683 3.8 186.2 1.0
CA L:CYS686 3.8 190.4 1.0
CD2 L:HIS665 3.9 173.8 1.0
CB L:THR685 4.2 182.4 1.0
C L:CYS686 4.5 190.4 1.0
C L:THR685 4.5 182.4 1.0
N L:ASN687 4.5 188.6 1.0
CB L:HIS665 4.6 173.8 1.0
CA L:CYS663 4.7 172.8 1.0
CA L:THR685 4.7 182.4 1.0
N L:THR685 4.8 182.4 1.0
O L:CYS663 4.9 172.8 1.0

Zinc binding site 4 out of 4 in 8t3y

Go back to Zinc Binding Sites List in 8t3y
Zinc binding site 4 out of 4 in the Structure of BRE1-Nucleosome Complex - STATE1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Structure of BRE1-Nucleosome Complex - STATE1 within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Zn802

b:214.6
occ:1.00
 SG L:CYS668 2.3 189.7 1.0
SG L:CYS648 2.3 189.0 1.0
SG L:CYS671 2.3 191.0 1.0
SG L:CYS651 2.3 190.1 1.0
CB L:CYS648 3.0 189.0 1.0
CB L:CYS671 3.2 191.0 1.0
CB L:CYS651 3.3 190.1 1.0
N L:CYS651 3.6 190.1 1.0
CB L:CYS668 3.7 189.7 1.0
N L:CYS671 4.1 191.0 1.0
CA L:CYS651 4.1 190.1 1.0
CB L:LEU650 4.1 186.6 1.0
CA L:CYS671 4.2 191.0 1.0
CA L:CYS648 4.4 189.0 1.0
N L:CYS668 4.5 189.7 1.0
C L:LEU650 4.6 186.6 1.0
CA L:CYS668 4.6 189.7 1.0
OD1 L:ASN654 4.7 181.8 1.0
CA L:LEU650 4.7 186.6 1.0
N L:LEU650 4.8 186.6 1.0
C L:CYS648 4.8 189.0 1.0
CB L:ASN654 4.8 181.8 1.0
CB L:ASN670 4.8 187.6 1.0
O L:CYS648 4.9 189.0 1.0
O L:CYS668 4.9 189.7 1.0
N L:SER652 4.9 188.0 1.0
C L:CYS651 5.0 190.1 1.0

Reference:

F.Zhao, C.W.Hicks, C.Wolberger. Cryo-Em Structure of BRE1-Nucleosome Complex in State 1 To Be Published.
Page generated: Thu Oct 31 11:25:52 2024

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