Zinc in PDB 8rr3: Human Mitochondrial Rnase Z Complex with ELAC2-D550N Catalytic Mutant and Trna-Gln Precursor (Composite Model)

All present enzymatic activity of Human Mitochondrial Rnase Z Complex with ELAC2-D550N Catalytic Mutant and Trna-Gln Precursor (Composite Model):
1.1.1.159; 1.1.1.178; 1.1.1.239; 1.1.1.35; 1.1.1.53; 1.1.1.62; 2.1.1.218; 2.1.1.221; 3.1.26.11;

The binding sites of Zinc atom in the Human Mitochondrial Rnase Z Complex with ELAC2-D550N Catalytic Mutant and Trna-Gln Precursor (Composite Model) (pdb code 8rr3). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Human Mitochondrial Rnase Z Complex with ELAC2-D550N Catalytic Mutant and Trna-Gln Precursor (Composite Model), PDB code: 8rr3:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Human Mitochondrial Rnase Z Complex with ELAC2-D550N Catalytic Mutant and Trna-Gln Precursor (Composite Model)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Human Mitochondrial Rnase Z Complex with ELAC2-D550N Catalytic Mutant and Trna-Gln Precursor (Composite Model) within 5.0Å range: probe atom residue distance (Å) B Occ E:Zn901 b:309.0 occ:1.00 OD1 E:ASP666 2.0 243.3 1.0 NE2 E:HIS724 2.1 249.2 1.0 NE2 E:HIS551 2.1 255.2 1.0 OD2 E:ASP666 2.1 243.3 1.0 CG E:ASP666 2.3 243.3 1.0 CD2 E:HIS724 2.6 249.2 1.0 CD2 E:HIS551 2.7 255.2 1.0 CE1 E:HIS551 3.1 255.2 1.0 CE1 E:HIS546 3.1 260.6 1.0 CE1 E:HIS724 3.1 249.2 1.0 ZN E:ZN902 3.7 275.4 1.0 CG E:HIS724 3.7 249.2 1.0 NE2 E:HIS546 3.8 260.6 1.0 CG E:HIS551 3.8 255.2 1.0 CB E:ASP666 3.8 243.3 1.0 ND1 E:HIS551 4.0 255.2 1.0 ND1 E:HIS724 4.0 249.2 1.0 ND1 E:HIS548 4.0 257.7 1.0 ND1 E:HIS546 4.2 260.6 1.0 ND2 E:ASN550 4.2 252.7 1.0 OD1 E:ASN550 4.3 252.7 1.0 N E:ASP666 4.6 243.3 1.0 CA E:ASP666 4.7 243.3 1.0 CG E:ASN550 4.7 252.7 1.0 CE1 E:HIS548 4.8 257.7 1.0 CE1 E:HIS702 4.9 232.3 1.0 CG E:HIS548 5.0 257.7 1.0

Zinc binding site 2 out of 2 in the Human Mitochondrial Rnase Z Complex with ELAC2-D550N Catalytic Mutant and Trna-Gln Precursor (Composite Model)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Human Mitochondrial Rnase Z Complex with ELAC2-D550N Catalytic Mutant and Trna-Gln Precursor (Composite Model) within 5.0Å range: probe atom residue distance (Å) B Occ E:Zn902 b:275.4 occ:1.00 NE2 E:HIS546 2.1 260.6 1.0 OD2 E:ASP666 2.2 243.3 1.0 NE2 E:HIS644 2.2 245.3 1.0 ND1 E:HIS548 2.3 257.7 1.0 CE1 E:HIS548 2.8 257.7 1.0 CE1 E:HIS644 2.9 245.3 1.0 CD2 E:HIS546 3.0 260.6 1.0 CE1 E:HIS546 3.0 260.6 1.0 CG E:HIS548 3.2 257.7 1.0 CG E:ASP666 3.3 243.3 1.0 CD2 E:HIS644 3.3 245.3 1.0 ZN E:ZN901 3.7 309.0 1.0 NE2 E:HIS548 3.8 257.7 1.0 CB E:HIS548 3.8 257.7 1.0 CB E:ASP666 3.8 243.3 1.0 ND1 E:HIS644 4.0 245.3 1.0 CD2 E:HIS548 4.0 257.7 1.0 ND1 E:HIS546 4.1 260.6 1.0 CG E:HIS546 4.1 260.6 1.0 CG E:HIS644 4.2 245.3 1.0 OD1 E:ASP666 4.3 243.3 1.0 CE1 E:HIS702 4.5 232.3 1.0 NE2 E:HIS724 4.9 249.2 1.0 NE2 E:HIS702 5.0 232.3 1.0

A.Bhatta, B.Kuhle, R.D.Yu, K.Ditter, H.S.Hillen. Structural Basis of Human Mitochondrial and Nuclear Trna 3'-End Processing To Be Published.