Zinc in PDB 8rio: Beta-Keto Acid Cleavage Enzyme From Paracoccus Denitrificans

The structure of Beta-Keto Acid Cleavage Enzyme From Paracoccus Denitrificans, PDB code: 8rio was solved by D.G.Marchal, J.Zarzycki, T.J.Erb, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	24.78 / 1.45
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	81.065, 137.871, 132.517, 90, 90, 90
R / Rfree (%)	15.6 / 17.7

The binding sites of Zinc atom in the Beta-Keto Acid Cleavage Enzyme From Paracoccus Denitrificans (pdb code 8rio). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Beta-Keto Acid Cleavage Enzyme From Paracoccus Denitrificans, PDB code: 8rio:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Beta-Keto Acid Cleavage Enzyme From Paracoccus Denitrificans


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Beta-Keto Acid Cleavage Enzyme From Paracoccus Denitrificans within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn401 b:11.8 occ:0.90 OE2 A:GLU258 2.0 10.5 1.0 NE2 A:HIS49 2.1 11.6 1.0 NE2 A:HIS51 2.1 10.8 1.0 O A:PRO402 2.2 14.8 0.7 O A:HOH529 2.3 15.8 1.0 OXT A:PRO402 2.7 18.2 0.7 C A:PRO402 2.7 19.3 0.7 CD A:GLU258 2.9 10.6 1.0 CD2 A:HIS49 3.0 10.7 1.0 CE1 A:HIS51 3.0 12.1 1.0 CE1 A:HIS49 3.1 13.8 1.0 OE1 A:GLU258 3.1 11.3 1.0 CD2 A:HIS51 3.1 10.9 1.0 O A:HOH664 3.9 15.5 1.0 CA A:PRO402 4.0 16.8 0.7 NH2 A:ARG254 4.0 11.1 1.0 O A:HOH615 4.1 38.9 1.0 OG1 A:THR85 4.1 13.3 1.0 ND1 A:HIS49 4.2 13.6 1.0 ND1 A:HIS51 4.2 11.6 1.0 CG A:HIS49 4.2 10.5 1.0 CG A:HIS51 4.3 11.5 1.0 CG A:GLU258 4.3 10.8 1.0 N A:PRO402 4.4 19.5 0.7 OE2 A:GLU171 4.4 15.3 1.0 O A:HOH611 4.4 17.6 1.0 CB A:THR85 4.5 11.6 1.0 CA A:GLY15 4.7 11.0 1.0 O A:HOH650 4.8 23.0 1.0 CZ A:ARG254 5.0 10.6 1.0 O A:HOH512 5.0 27.2 1.0

Zinc binding site 2 out of 2 in the Beta-Keto Acid Cleavage Enzyme From Paracoccus Denitrificans


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Beta-Keto Acid Cleavage Enzyme From Paracoccus Denitrificans within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn401 b:11.9 occ:0.92 OE2 B:GLU258 2.0 11.6 1.0 NE2 B:HIS49 2.1 11.4 1.0 NE2 B:HIS51 2.1 10.6 1.0 OXT B:PRO402 2.2 15.9 0.6 O B:HOH545 2.3 15.0 1.0 O B:PRO402 2.6 15.9 0.6 C B:PRO402 2.7 19.5 0.6 CD B:GLU258 2.8 10.4 1.0 CE1 B:HIS49 3.1 14.1 1.0 CE1 B:HIS51 3.1 11.3 1.0 OE1 B:GLU258 3.1 11.0 1.0 CD2 B:HIS49 3.1 10.3 1.0 CD2 B:HIS51 3.1 10.8 1.0 O B:HOH662 3.9 14.1 1.0 CA B:PRO402 4.0 17.8 0.6 NH2 B:ARG254 4.0 10.1 1.0 OG1 B:THR85 4.2 12.2 1.0 ND1 B:HIS49 4.2 12.8 1.0 ND1 B:HIS51 4.2 11.4 1.0 CG B:HIS49 4.2 10.3 1.0 CG B:GLU258 4.3 10.7 1.0 CG B:HIS51 4.3 10.9 1.0 N B:PRO402 4.4 20.7 0.6 OE2 B:GLU171 4.4 13.9 1.0 O B:HOH576 4.4 18.5 1.0 CB B:THR85 4.5 11.3 1.0 CA B:GLY15 4.7 10.9 1.0 O B:HOH502 4.8 24.1 1.0 O B:HOH710 4.9 22.4 1.0 CZ B:ARG254 5.0 9.9 1.0

A.G.Satanowski, D.G.Marchal, A.Perret, J.-L.Petit, M.Bouzon, V.Doering, I.Dubois, H.He, E.N.Smith, V.Pellouin, H.M.Petri, V.Rainaldi, M.Nattermann, S.Burgener, N.Paczia, J.Zarzycki, M.Heinemann, A.Bar-Even, T.J.Erb. Design and Implementation of Aerobic, Ambient CO2-Reduction As An Entry-Point For Enhanced Carbon Fixation Nat Commun.
ISSN: ESSN 2041-1723