Zinc in PDB 8rci: Human P53 Dna-Binding Domain Bound to Darpin C10

The structure of Human P53 Dna-Binding Domain Bound to Darpin C10, PDB code: 8rci was solved by D.I.Balourdas, P.Muenick, A.Strubel, S.Knapp, V.Dotsch, A.C.Joerger, Structural Genomics Consortium (Sgc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.90 / 1.50
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	37.692, 93.897, 53.168, 90, 110.17, 90
R / Rfree (%)	15.1 / 19.7

The binding sites of Zinc atom in the Human P53 Dna-Binding Domain Bound to Darpin C10 (pdb code 8rci). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Human P53 Dna-Binding Domain Bound to Darpin C10, PDB code: 8rci:

Zinc binding site 1 out of 1 in the Human P53 Dna-Binding Domain Bound to Darpin C10


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Human P53 Dna-Binding Domain Bound to Darpin C10 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn303 b:20.7 occ:1.00 ND1 A:HIS179 2.1 20.3 1.0 SG A:CYS176 2.3 21.6 1.0 SG A:CYS238 2.3 19.9 1.0 SG A:CYS242 2.3 21.7 1.0 CE1 A:HIS179 3.0 23.2 1.0 CG A:HIS179 3.1 22.1 1.0 CB A:CYS242 3.1 20.0 1.0 CB A:CYS238 3.3 16.8 1.0 CB A:CYS176 3.4 22.2 1.0 CB A:HIS179 3.5 22.1 1.0 CA A:CYS238 3.9 18.1 1.0 N A:CYS176 3.9 18.3 1.0 NE2 A:HIS179 4.1 24.7 1.0 O A:HOH592 4.2 46.1 1.0 CD2 A:HIS179 4.2 26.4 1.0 CA A:CYS176 4.2 20.6 1.0 N A:HIS179 4.5 23.5 1.0 N A:ASN239 4.5 18.9 1.0 CA A:CYS242 4.5 20.3 1.0 O A:HOH493 4.6 22.7 1.0 CA A:HIS179 4.6 23.9 1.0 O A:MET237 4.7 19.9 1.0 C A:CYS238 4.7 18.8 1.0 O A:CYS176 4.8 22.0 1.0 C A:CYS176 4.9 22.5 1.0 O A:HOH528 4.9 35.7 1.0

D.I.Balourdas, P.Muenick, A.Strubel, S.Knapp, V.Dotsch, A.C.Joerger, Structural Genomics Consortium (Sgc). Human P53 Dna-Binding Domain Bound to Darpin C10 To Be Published.