Zinc in PDB 8qek: Neck and Tail of Phage 812 After Tail Contraction (Composite)

The binding sites of Zinc atom in the Neck and Tail of Phage 812 After Tail Contraction (Composite) (pdb code 8qek). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the Neck and Tail of Phage 812 After Tail Contraction (Composite), PDB code: 8qek:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in the Neck and Tail of Phage 812 After Tail Contraction (Composite)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Neck and Tail of Phage 812 After Tail Contraction (Composite) within 5.0Å range: probe atom residue distance (Å) B Occ S:Zn300 b:46.2 occ:1.00 SG S:CYS83 2.3 29.1 1.0 SG S:CYS68 2.3 26.4 1.0 SG S:CYS66 2.3 25.0 1.0 SG S:CYS80 2.3 29.2 1.0 CB S:CYS68 3.0 26.4 1.0 CB S:CYS80 3.1 29.2 1.0 CB S:CYS66 3.2 25.0 1.0 CB S:CYS83 3.7 29.1 1.0 N S:CYS83 4.0 29.1 1.0 O S:CYS83 4.2 29.1 1.0 CA S:CYS68 4.2 26.4 1.0 N S:CYS68 4.2 26.4 1.0 CA S:CYS83 4.3 29.1 1.0 CA S:CYS80 4.6 29.2 1.0 CA S:CYS66 4.6 25.0 1.0 CB S:ARG82 4.7 29.1 1.0 C S:ARG82 4.7 29.1 1.0 C S:CYS83 4.7 29.1 1.0 C S:CYS66 4.9 25.0 1.0 O S:LYS86 4.9 24.4 1.0 C S:CYS68 4.9 26.4 1.0

Zinc binding site 2 out of 3 in the Neck and Tail of Phage 812 After Tail Contraction (Composite)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Neck and Tail of Phage 812 After Tail Contraction (Composite) within 5.0Å range: probe atom residue distance (Å) B Occ b:Zn400 b:46.2 occ:1.00 OE2 D:GLU311 2.2 21.1 1.0 NE2 b:HIS117 2.3 58.9 1.0 CD2 b:HIS117 3.2 58.9 1.0 CE1 b:HIS117 3.3 58.9 1.0 CD D:GLU311 3.4 21.1 1.0 OE1 D:GLU311 3.9 21.1 1.0 NZ b:LYS121 4.2 54.9 1.0 O b:ALA152 4.2 56.5 1.0 OD1 b:ASN298 4.3 53.8 1.0 OE1 p:GLN302 4.3 21.4 1.0 CG b:HIS117 4.4 58.9 1.0 ND1 b:HIS117 4.4 58.9 1.0 NE2 b:HIS154 4.5 58.1 1.0 CG D:GLU311 4.5 21.1 1.0 CD p:GLN302 4.8 21.4 1.0 O b:TYR297 4.9 55.0 1.0 CA b:ASN298 5.0 53.8 1.0

Zinc binding site 3 out of 3 in the Neck and Tail of Phage 812 After Tail Contraction (Composite)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Neck and Tail of Phage 812 After Tail Contraction (Composite) within 5.0Å range: probe atom residue distance (Å) B Occ c:Zn400 b:46.2 occ:1.00 NE2 c:HIS117 2.5 58.6 1.0 CD2 c:HIS117 3.4 58.6 1.0 CE1 c:HIS117 3.5 58.6 1.0 NZ c:LYS121 3.8 56.6 1.0 OD1 c:ASN298 4.0 53.7 1.0 OE1 D:GLN302 4.3 21.4 1.0 O c:ALA152 4.3 58.7 1.0 NE2 c:HIS154 4.4 60.2 1.0 ND1 c:HIS117 4.5 58.6 1.0 CG c:HIS117 4.5 58.6 1.0 CD D:GLN302 4.8 21.4 1.0 CA c:ASN298 4.8 53.7 1.0 CG c:ASN298 4.9 53.7 1.0 O c:TYR297 4.9 57.8 1.0

Z.Cienikova, J.Novacek, M.Siborova, B.Popelarova, T.Fuzik, M.Benesik, P.Bardy, P.Plevka. Genome Anchoring, Retention, and Release By Neck Proteins of Herelleviridae Phage 812 To Be Published.