Zinc in PDB 8prf: The Structure of NVBAGEL5

The structure of The Structure of NVBAGEL5, PDB code: 8prf was solved by L.Vandebroek, A.R.D.Voet, X.Y.Lee, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.73 / 2.80
Space group	I 4 2 2
Cell size a, b, c (Å), α, β, γ (°)	56.183, 56.183, 109.806, 90, 90, 90
R / Rfree (%)	20.4 / 27.3

The binding sites of Zinc atom in the The Structure of NVBAGEL5 (pdb code 8prf). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the The Structure of NVBAGEL5, PDB code: 8prf:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the The Structure of NVBAGEL5


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The Structure of NVBAGEL5 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn101 b:27.4 occ:0.50 O A:HOH205 2.0 37.8 1.0 NE2 A:HIS23 2.3 18.7 1.0 CE1 A:HIS23 3.2 13.1 1.0 CD2 A:HIS23 3.3 21.0 1.0 OG A:SER43 4.2 28.5 1.0 ND1 A:HIS23 4.3 20.8 1.0 CG A:HIS23 4.4 21.0 1.0 O A:ASN21 4.6 23.3 1.0 N A:SER43 4.8 21.2 1.0

Zinc binding site 2 out of 2 in the The Structure of NVBAGEL5


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of The Structure of NVBAGEL5 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn102 b:28.9 occ:0.50 CE1 A:HIS63 1.8 29.8 1.0 NE2 A:HIS63 2.3 22.1 1.0 O A:HOH204 2.4 31.0 1.0 ND1 A:HIS63 3.1 29.2 1.0 CD2 A:HIS63 3.7 24.2 1.0 CG A:HIS63 4.0 18.9 1.0 O A:ASN61 4.3 23.1 1.0

L.Vandebroek, A.R.D.Voet, X.Y.Lee. The Structure of V13BAGEL2 To Be Published.