Zinc in PDB 8prc: The Structure of V13BAGEL8

The structure of The Structure of V13BAGEL8, PDB code: 8prc was solved by L.Vandebroek, A.R.D.Voet, X.Y.Lee, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	38.30 / 2.35
Space group	I 4 2 2
Cell size a, b, c (Å), α, β, γ (°)	54.159, 54.159, 109.537, 90, 90, 90
R / Rfree (%)	23.8 / 31.2

The binding sites of Zinc atom in the The Structure of V13BAGEL8 (pdb code 8prc). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the The Structure of V13BAGEL8, PDB code: 8prc:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in the The Structure of V13BAGEL8


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The Structure of V13BAGEL8 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn101 b:52.5 occ:0.76 NE2 A:HIS73 2.2 48.1 1.0 CD2 A:HIS73 3.1 53.3 1.0 CE1 A:HIS73 3.3 46.9 1.0 O A:ASN71 3.9 54.6 1.0 CG A:HIS73 4.3 53.3 1.0 ND1 A:HIS73 4.4 42.4 1.0

Zinc binding site 2 out of 3 in the The Structure of V13BAGEL8


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of The Structure of V13BAGEL8 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn102 b:51.9 occ:0.79 CE1 A:HIS33 2.2 56.2 1.0 NE2 A:HIS33 2.5 55.1 1.0 ND1 A:HIS33 3.4 53.9 1.0 CD2 A:HIS33 3.8 51.7 1.0 OG A:SER53 4.2 58.8 1.0 N A:SER53 4.2 52.5 1.0 CG A:HIS33 4.3 47.8 1.0 CA A:GLY52 4.3 49.0 1.0 C A:GLY52 4.7 50.2 1.0 O A:ASN31 4.9 51.3 1.0

Zinc binding site 3 out of 3 in the The Structure of V13BAGEL8


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of The Structure of V13BAGEL8 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn103 b:108.2 occ:0.53 O A:HOH213 2.6 40.9 0.2

L.Vandebroek, A.R.D.Voet, X.Y.Lee. The Structure of V13BAGEL8 To Be Published.