Zinc in PDB 8p3a: Bacteriophage T5 L-Alanoyl-D-Glutamate Peptidase ZN2+/CA2+ Form

The structure of Bacteriophage T5 L-Alanoyl-D-Glutamate Peptidase ZN2+/CA2+ Form also contains other interesting chemical elements:

Calcium

(Ca)

20 atoms

The binding sites of Zinc atom in the Bacteriophage T5 L-Alanoyl-D-Glutamate Peptidase ZN2+/CA2+ Form (pdb code 8p3a). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Bacteriophage T5 L-Alanoyl-D-Glutamate Peptidase ZN2+/CA2+ Form, PDB code: 8p3a:

Zinc binding site 1 out of 1 in the Bacteriophage T5 L-Alanoyl-D-Glutamate Peptidase ZN2+/CA2+ Form


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Bacteriophage T5 L-Alanoyl-D-Glutamate Peptidase ZN2+/CA2+ Form within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn201 b:0.0 occ:1.00 OD1 A:ASP73 3.1 0.0 1.0 NE2 A:HIS66 3.2 0.0 1.0 ND1 A:HIS133 3.2 0.0 1.0 HB2 A:HIS133 3.3 0.0 1.0 HB2 A:ASP73 3.7 0.0 1.0 CG A:ASP73 4.0 0.0 1.0 HG2 A:GLN39 4.1 0.0 1.0 CG A:HIS133 4.1 0.0 1.0 CD2 A:HIS66 4.1 0.0 1.0 CE1 A:HIS66 4.1 0.0 1.0 CE1 A:HIS133 4.1 0.0 1.0 CB A:HIS133 4.1 0.0 1.0 HD2 A:HIS66 4.2 0.0 1.0 HE1 A:HIS66 4.2 0.0 1.0 HE1 A:HIS133 4.3 0.0 1.0 CB A:ASP73 4.4 0.0 1.0 HB3 A:HIS133 4.7 0.0 1.0 HB3 A:GLN39 4.7 0.0 1.0 HE22 A:GLN39 4.8 0.0 1.0

D.A.Prokhorov, G.V.Mikoulinskaia, N.V.Molochkov, V.N.Uversky, V.P.Kutyshenko. Mechanism of CA2+-Dependent Activation of L-Alanoyl-D-Glutamate Peptidase Bacteriophage T5. To Be Published.