Zinc in PDB 8p3a: Bacteriophage T5 L-Alanoyl-D-Glutamate Peptidase ZN2+/CA2+ Form

Other elements in 8p3a:

The structure of Bacteriophage T5 L-Alanoyl-D-Glutamate Peptidase ZN2+/CA2+ Form also contains other interesting chemical elements:

Calcium (Ca) 20 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Bacteriophage T5 L-Alanoyl-D-Glutamate Peptidase ZN2+/CA2+ Form (pdb code 8p3a). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Bacteriophage T5 L-Alanoyl-D-Glutamate Peptidase ZN2+/CA2+ Form, PDB code: 8p3a:

Zinc binding site 1 out of 1 in 8p3a

Go back to Zinc Binding Sites List in 8p3a
Zinc binding site 1 out of 1 in the Bacteriophage T5 L-Alanoyl-D-Glutamate Peptidase ZN2+/CA2+ Form


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Bacteriophage T5 L-Alanoyl-D-Glutamate Peptidase ZN2+/CA2+ Form within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn201

b:0.0
occ:1.00
OD1 A:ASP73 3.1 0.0 1.0
NE2 A:HIS66 3.2 0.0 1.0
ND1 A:HIS133 3.2 0.0 1.0
HB2 A:HIS133 3.3 0.0 1.0
HB2 A:ASP73 3.7 0.0 1.0
CG A:ASP73 4.0 0.0 1.0
HG2 A:GLN39 4.1 0.0 1.0
CG A:HIS133 4.1 0.0 1.0
CD2 A:HIS66 4.1 0.0 1.0
CE1 A:HIS66 4.1 0.0 1.0
CE1 A:HIS133 4.1 0.0 1.0
CB A:HIS133 4.1 0.0 1.0
HD2 A:HIS66 4.2 0.0 1.0
HE1 A:HIS66 4.2 0.0 1.0
HE1 A:HIS133 4.3 0.0 1.0
CB A:ASP73 4.4 0.0 1.0
HB3 A:HIS133 4.7 0.0 1.0
HB3 A:GLN39 4.7 0.0 1.0
HE22 A:GLN39 4.8 0.0 1.0

Reference:

D.A.Prokhorov, G.V.Mikoulinskaia, N.V.Molochkov, V.N.Uversky, V.P.Kutyshenko. Mechanism of CA2+-Dependent Activation of L-Alanoyl-D-Glutamate Peptidase Bacteriophage T5. To Be Published.
Page generated: Fri Jul 28 07:22:07 2023

Last articles

Ca in 5ZXH
Ca in 6A2W
Ca in 6A12
Ca in 6A0K
Ca in 5ZYV
Ca in 5ZZB
Ca in 5ZZA
Ca in 6A0J
Ca in 5ZRU
Ca in 5ZNO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy