Zinc in PDB 8p39: Cryo-Em Structure of the Anaerobic Ribonucleotide Reductase From Prevotella Copri in Its Dimeric, Dgtp/Atp-Bound State

The structure of Cryo-Em Structure of the Anaerobic Ribonucleotide Reductase From Prevotella Copri in Its Dimeric, Dgtp/Atp-Bound State also contains other interesting chemical elements:

Magnesium

(Mg)

2 atoms

The binding sites of Zinc atom in the Cryo-Em Structure of the Anaerobic Ribonucleotide Reductase From Prevotella Copri in Its Dimeric, Dgtp/Atp-Bound State (pdb code 8p39). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Cryo-Em Structure of the Anaerobic Ribonucleotide Reductase From Prevotella Copri in Its Dimeric, Dgtp/Atp-Bound State, PDB code: 8p39:

Zinc binding site 1 out of 1 in the Cryo-Em Structure of the Anaerobic Ribonucleotide Reductase From Prevotella Copri in Its Dimeric, Dgtp/Atp-Bound State


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of the Anaerobic Ribonucleotide Reductase From Prevotella Copri in Its Dimeric, Dgtp/Atp-Bound State within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn804 b:96.0 occ:1.00 SG B:CYS698 2.3 65.7 1.0 SG B:CYS695 2.3 61.3 1.0 SG B:CYS683 2.3 68.2 1.0 SG B:CYS680 2.3 63.9 1.0 CB B:CYS695 2.8 58.4 1.0 CB B:CYS683 2.9 62.8 1.0 CB B:CYS698 3.0 56.9 1.0 N B:CYS683 3.3 60.8 1.0 CB B:CYS680 3.5 47.5 1.0 N B:CYS698 3.6 60.1 1.0 CA B:CYS683 3.7 62.1 1.0 CA B:CYS698 3.9 61.4 1.0 CA B:CYS695 4.3 57.8 1.0 CB B:ASP682 4.3 62.9 1.0 C B:ASP682 4.4 61.7 1.0 N B:GLY699 4.5 57.7 1.0 CB B:LYS697 4.7 58.8 1.0 N B:GLY684 4.7 55.7 1.0 C B:CYS683 4.7 59.0 1.0 CA B:ASP682 4.7 63.8 1.0 C B:LYS697 4.7 58.2 1.0 N B:ASP682 4.8 63.5 1.0 C B:CYS698 4.8 60.5 1.0 C B:CYS695 4.8 60.5 1.0 CA B:CYS680 4.9 47.3 1.0 N B:LYS697 4.9 58.1 1.0

O.Bimai, I.Banerjee, I.Rozman Grinberg, P.Huang, D.Lundin, B.M.Sjoberg, D.T.Logan. Activity Modulation in Anaerobic Ribonucleotide Reductase: Nucleotide Binding to the Atp-Cone Mediates Long-Range Order-Disorder Transitions in the Active Site To Be Published.