Zinc in PDB 8jfy: Cryo-Em Structure of Rdgc/CA2+-Cam Complex

All present enzymatic activity of Cryo-Em Structure of Rdgc/CA2+-Cam Complex:
3.1.3.16;

The structure of Cryo-Em Structure of Rdgc/CA2+-Cam Complex also contains other interesting chemical elements:

Calcium	(Ca)	12 atoms
Iron	(Fe)	2 atoms

The binding sites of Zinc atom in the Cryo-Em Structure of Rdgc/CA2+-Cam Complex (pdb code 8jfy). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Cryo-Em Structure of Rdgc/CA2+-Cam Complex, PDB code: 8jfy:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Cryo-Em Structure of Rdgc/CA2+-Cam Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of Rdgc/CA2+-Cam Complex within 5.0Å range: probe atom residue distance (Å) B Occ D:Zn701 b:113.6 occ:1.00 NE2 D:HIS360 2.1 75.9 1.0 OD1 D:ASN219 2.1 56.1 1.0 OD2 D:ASP187 2.3 43.2 1.0 CD2 D:HIS360 2.4 74.0 1.0 NE2 D:HIS271 2.5 38.6 1.0 CE1 D:HIS360 2.9 68.0 1.0 FE D:FE702 3.0 75.0 1.0 CG D:ASN219 3.1 48.2 1.0 CG D:HIS360 3.1 75.2 1.0 CG D:ASP187 3.2 54.0 1.0 CE1 D:HIS271 3.3 39.0 1.0 ND1 D:HIS360 3.4 63.0 1.0 CD2 D:HIS271 3.5 40.3 1.0 OD1 D:ASP187 3.5 49.8 1.0 ND2 D:ASN219 3.7 47.4 1.0 OD2 D:ASP158 3.7 57.2 1.0 CA D:HIS360 4.1 52.8 1.0 CD2 D:HIS220 4.1 54.8 1.0 CB D:HIS360 4.2 59.4 1.0 O D:HIS360 4.3 72.2 1.0 CB D:ASN219 4.3 40.7 1.0 ND1 D:HIS271 4.4 37.0 1.0 CG D:HIS271 4.5 33.2 1.0 CB D:ASP187 4.6 48.3 1.0 C D:HIS360 4.7 59.0 1.0 N D:ASN219 4.7 52.3 1.0 NE2 D:HIS220 4.8 52.5 1.0 CG D:ASP158 4.8 50.8 1.0 O D:SER359 4.9 69.2 1.0

Zinc binding site 2 out of 2 in the Cryo-Em Structure of Rdgc/CA2+-Cam Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Cryo-Em Structure of Rdgc/CA2+-Cam Complex within 5.0Å range: probe atom residue distance (Å) B Occ C:Zn701 b:113.6 occ:1.00 NE2 C:HIS360 2.1 75.9 1.0 OD1 C:ASN219 2.1 56.1 1.0 OD2 C:ASP187 2.3 43.2 1.0 CD2 C:HIS360 2.4 74.0 1.0 NE2 C:HIS271 2.5 38.6 1.0 CE1 C:HIS360 2.9 68.0 1.0 FE C:FE702 3.0 75.0 1.0 CG C:ASN219 3.1 48.2 1.0 CG C:HIS360 3.1 75.2 1.0 CG C:ASP187 3.2 54.0 1.0 CE1 C:HIS271 3.3 39.0 1.0 ND1 C:HIS360 3.4 63.0 1.0 CD2 C:HIS271 3.5 40.3 1.0 OD1 C:ASP187 3.5 49.8 1.0 ND2 C:ASN219 3.7 47.4 1.0 OD2 C:ASP158 3.7 57.2 1.0 CA C:HIS360 4.1 52.8 1.0 CD2 C:HIS220 4.1 54.8 1.0 CB C:HIS360 4.2 59.4 1.0 O C:HIS360 4.3 72.2 1.0 CB C:ASN219 4.3 40.7 1.0 ND1 C:HIS271 4.4 37.0 1.0 CG C:HIS271 4.5 33.2 1.0 CB C:ASP187 4.6 48.3 1.0 C C:HIS360 4.7 59.0 1.0 N C:ASN219 4.7 52.3 1.0 NE2 C:HIS220 4.8 52.5 1.0 CG C:ASP158 4.8 50.8 1.0 O C:SER359 4.9 69.2 1.0

Z.M.Liu, W.Liu, C.Wu, J.Liu. Cryo-Em Structure of Rdgc/CA2+-Cam Complex To Be Published.