Zinc in PDB 8d8n: Gramp Non-Match Pfs Target Rna

The binding sites of Zinc atom in the Gramp Non-Match Pfs Target Rna (pdb code 8d8n). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Gramp Non-Match Pfs Target Rna, PDB code: 8d8n:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in the Gramp Non-Match Pfs Target Rna


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Gramp Non-Match Pfs Target Rna within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn1801 b:156.3 occ:1.00 O B:ILE115 1.9 160.1 1.0 SG B:CYS116 2.2 147.6 1.0 C B:ILE115 2.2 160.1 1.0 CB B:CYS83 2.3 144.2 1.0 SG B:CYS83 2.3 144.2 1.0 N B:CYS116 2.6 147.6 1.0 CB B:CYS116 2.9 147.6 1.0 CA B:ILE115 3.1 160.1 1.0 SG B:CYS125 3.1 127.2 1.0 CA B:CYS116 3.3 147.6 1.0 CA B:CYS83 3.8 144.2 1.0 CG1 B:ILE115 3.9 160.1 1.0 CD1 B:ILE115 3.9 160.1 1.0 CB B:ILE115 4.0 160.1 1.0 N B:CYS83 4.2 144.2 1.0 N B:ILE115 4.2 160.1 1.0 CB B:CYS125 4.3 127.2 1.0 C B:CYS116 4.4 147.6 1.0 SG B:CYS82 4.5 137.8 1.0 O B:ASN114 4.5 175.2 1.0 C B:CYS83 4.5 144.2 1.0 CB B:CYS122 4.7 136.9 1.0 N B:CYS125 4.7 127.2 1.0 CG2 B:ILE115 4.7 160.1 1.0 O B:CYS116 4.8 147.6 1.0 C B:ASN114 4.8 175.2 1.0 O B:CYS83 4.8 144.2 1.0

Zinc binding site 2 out of 4 in the Gramp Non-Match Pfs Target Rna


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Gramp Non-Match Pfs Target Rna within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn1802 b:145.2 occ:1.00 SG B:CYS486 2.2 128.1 1.0 SG B:CYS498 2.2 111.4 1.0 SG B:CYS496 2.3 118.7 1.0 CB B:CYS486 2.4 128.1 1.0 SG B:CYS501 3.0 111.5 1.0 CB B:CYS496 3.1 118.7 1.0 O B:CYS496 3.2 118.7 1.0 CA B:CYS486 3.9 128.1 1.0 C B:CYS496 3.9 118.7 1.0 CB B:CYS498 4.0 111.4 1.0 CA B:CYS496 4.2 118.7 1.0 CB B:CYS501 4.3 111.5 1.0 N B:CYS498 4.5 111.4 1.0 N B:CYS486 4.6 128.1 1.0 C B:CYS486 4.6 128.1 1.0 O B:CYS486 4.7 128.1 1.0 CG1 B:VAL500 4.8 116.2 1.0 CA B:CYS498 4.8 111.4 1.0 N B:ASN497 5.0 110.6 1.0

Zinc binding site 3 out of 4 in the Gramp Non-Match Pfs Target Rna


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Gramp Non-Match Pfs Target Rna within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn1803 b:199.3 occ:1.00 O B:CYS745 1.8 180.4 1.0 N B:CYS745 2.3 180.4 1.0 SG B:CYS750 2.3 144.6 1.0 C B:CYS745 2.3 180.4 1.0 CA B:CYS745 2.4 180.4 1.0 CB B:CYS745 2.5 180.4 1.0 CB B:CYS750 2.9 144.6 1.0 O B:HIS742 3.2 195.1 1.0 C B:ASP744 3.2 189.3 1.0 ND2 B:ASN755 3.3 147.8 1.0 N B:THR746 3.7 170.7 1.0 SG B:CYS745 3.7 180.4 1.0 O B:ASP744 3.9 189.3 1.0 CA B:ASP744 4.0 189.3 1.0 C B:HIS742 4.1 195.1 1.0 N B:ASP744 4.2 189.3 1.0 CA B:CYS750 4.4 144.6 1.0 CG B:ASN755 4.5 147.8 1.0 CA B:THR746 4.5 170.7 1.0 CA B:HIS742 4.5 195.1 1.0 C B:GLU743 4.6 188.8 1.0 O B:GLU743 4.9 188.8 1.0 N B:CYS747 4.9 162.2 1.0 N B:CYS750 5.0 144.6 1.0

Zinc binding site 4 out of 4 in the Gramp Non-Match Pfs Target Rna


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Gramp Non-Match Pfs Target Rna within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn1804 b:182.8 occ:1.00 SG B:CYS1018 2.3 164.5 1.0 SG B:CYS1417 2.3 144.4 1.0 SG B:CYS1406 2.4 169.9 1.0 SG B:CYS1414 2.4 150.2 1.0 CB B:CYS1406 2.6 169.9 1.0 CB B:CYS1417 3.0 144.4 1.0 CB B:CYS1018 3.5 164.5 1.0 CB B:CYS1414 3.6 150.2 1.0 N B:CYS1406 3.6 169.9 1.0 CA B:CYS1406 3.7 169.9 1.0 N B:CYS1414 4.1 150.2 1.0 CA B:CYS1417 4.3 144.4 1.0 N B:CYS1417 4.3 144.4 1.0 CA B:CYS1414 4.4 150.2 1.0 CA B:CYS1018 4.6 164.5 1.0 N B:CYS1018 4.7 164.5 1.0 O B:CYS1406 4.7 169.9 1.0 C B:CYS1406 4.7 169.9 1.0 O B:CYS1414 4.8 150.2 1.0 C B:PRO1405 4.9 168.3 1.0

C.Hu, S.P.B.Van Beljouw, K.H.Nam, G.Schuler, F.Ding, Y.Cui, A.Rodriguez-Molina, A.C.Haagsma, M.Valk, M.Pabst, S.J.J.Brouns, A.Ke. Craspase Is A Crispr Rna-Guided, Rna-Activated Protease. Science V. 377 1278 2022.
ISSN: ESSN 1095-9203
PubMed: 36007061
DOI: 10.1126/SCIENCE.ADD5064