Zinc in PDB 8d2z: Crystal Structure of A Metallo-Beta-Lactamase Superfamily Protein From Burkholderia Cenocepacia

The structure of Crystal Structure of A Metallo-Beta-Lactamase Superfamily Protein From Burkholderia Cenocepacia, PDB code: 8d2z was solved by Seattle Structural Genomics Center For Infectious Disease, Seattlestructural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	35.44 / 1.85
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	58.16, 89.39, 121.58, 90, 90, 90
R / Rfree (%)	15.1 / 18.3

The structure of Crystal Structure of A Metallo-Beta-Lactamase Superfamily Protein From Burkholderia Cenocepacia also contains other interesting chemical elements:

Chlorine

(Cl)

2 atoms

The binding sites of Zinc atom in the Crystal Structure of A Metallo-Beta-Lactamase Superfamily Protein From Burkholderia Cenocepacia (pdb code 8d2z). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of A Metallo-Beta-Lactamase Superfamily Protein From Burkholderia Cenocepacia, PDB code: 8d2z:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of A Metallo-Beta-Lactamase Superfamily Protein From Burkholderia Cenocepacia


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of A Metallo-Beta-Lactamase Superfamily Protein From Burkholderia Cenocepacia within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn401 b:25.3 occ:0.90 N1 A:OXM402 2.1 27.7 0.8 O3 A:OXM402 2.2 21.3 0.8 NE2 A:HIS166 2.2 21.7 1.0 NE2 A:HIS79 2.2 22.9 1.0 ND1 A:HIS81 2.2 23.8 1.0 C1 A:OXM402 2.8 35.2 0.8 C2 A:OXM402 2.8 33.5 0.8 OD2 A:ASP185 2.9 34.0 1.0 CD2 A:HIS79 3.0 24.8 1.0 CD2 A:HIS166 3.1 20.9 1.0 CE1 A:HIS81 3.1 23.5 1.0 CE1 A:HIS166 3.2 21.6 1.0 CG A:HIS81 3.3 23.3 1.0 CE1 A:HIS79 3.3 27.4 1.0 CB A:HIS81 3.6 21.9 1.0 CG A:ASP185 3.8 31.4 1.0 O1 A:OXM402 4.0 29.1 0.8 O2 A:OXM402 4.0 36.1 0.8 CB A:ASP185 4.2 26.2 1.0 CG A:HIS79 4.2 18.4 1.0 ND1 A:HIS166 4.3 21.4 1.0 CG A:HIS166 4.3 20.4 1.0 NE2 A:HIS81 4.3 23.6 1.0 ND1 A:HIS79 4.3 24.9 1.0 CD2 A:HIS81 4.4 22.6 1.0 CG A:ARG84 4.7 29.4 1.0 NE A:ARG84 4.8 32.0 1.0 OD1 A:ASP185 4.9 37.9 1.0 CD2 A:TYR194 4.9 25.5 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of A Metallo-Beta-Lactamase Superfamily Protein From Burkholderia Cenocepacia


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of A Metallo-Beta-Lactamase Superfamily Protein From Burkholderia Cenocepacia within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn400 b:26.1 occ:0.90 N1 B:OXM401 2.2 26.1 0.7 NE2 B:HIS166 2.2 24.8 1.0 ND1 B:HIS81 2.2 25.2 1.0 NE2 B:HIS79 2.2 26.0 1.0 O3 B:OXM401 2.2 21.1 0.7 OD2 B:ASP185 2.6 37.0 1.0 C2 B:OXM401 2.8 37.3 0.7 C1 B:OXM401 2.8 37.1 0.7 CD2 B:HIS79 3.1 25.8 1.0 CE1 B:HIS166 3.1 28.7 1.0 CE1 B:HIS81 3.1 29.2 1.0 CD2 B:HIS166 3.2 23.4 1.0 CG B:HIS81 3.3 24.7 1.0 CE1 B:HIS79 3.3 28.0 1.0 CB B:HIS81 3.6 23.0 1.0 CG B:ASP185 3.7 33.3 1.0 O2 B:OXM401 4.0 36.2 0.7 O1 B:OXM401 4.0 30.9 0.7 CB B:ASP185 4.1 24.8 1.0 ND1 B:HIS166 4.2 24.1 1.0 CG B:HIS79 4.3 25.5 1.0 NE2 B:HIS81 4.3 27.2 1.0 CG B:HIS166 4.3 22.4 1.0 ND1 B:HIS79 4.3 26.4 1.0 CD2 B:HIS81 4.4 22.9 1.0 O B:HOH647 4.4 45.1 1.0 NE B:ARG84 4.6 31.6 1.0 OD1 B:ASP185 4.7 41.4 1.0 CG B:ARG84 4.7 28.7 1.0 CD2 B:TYR194 5.0 25.6 1.0

J.Abendroth, D.M.Dranow, D.D.Lorimer, P.S.Horanyi, T.E.Edwards. Crystal Structure of A Metallo-Beta-Lactamase Superfamily Protein From Burkholderia Cenocepacia To Be Published.