Zinc in PDB 7yh2: TRAPPC3 From Thorarchaeota AB25

The structure of TRAPPC3 From Thorarchaeota AB25, PDB code: 7yh2 was solved by R.C.Robinson, L.T.Tran, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	32.10 / 1.91
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	63.311, 68.502, 72.666, 90, 90, 90
R / Rfree (%)	16.9 / 21.2

The binding sites of Zinc atom in the TRAPPC3 From Thorarchaeota AB25 (pdb code 7yh2). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the TRAPPC3 From Thorarchaeota AB25, PDB code: 7yh2:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the TRAPPC3 From Thorarchaeota AB25


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of TRAPPC3 From Thorarchaeota AB25 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn201 b:24.5 occ:0.99 SG A:CYS100 2.3 20.6 1.0 SG A:CYS117 2.3 18.8 1.0 SG A:CYS150 2.4 19.5 1.0 SG A:CYS103 2.4 23.2 1.0 CB A:CYS100 2.9 22.0 1.0 CB A:CYS103 3.4 26.3 1.0 CB A:CYS150 3.5 18.6 1.0 CB A:CYS117 3.5 19.1 1.0 N A:CYS103 4.0 23.5 1.0 OG A:SER142 4.1 23.0 1.0 NE2 A:GLN139 4.2 18.6 1.0 CA A:CYS103 4.4 24.2 1.0 CA A:CYS100 4.4 21.3 1.0 CZ2 A:TRP152 4.5 17.8 1.0 CB A:TRP102 4.6 17.5 1.0 O A:HOH310 4.6 30.2 1.0 CH2 A:TRP152 4.6 17.6 1.0 O A:HOH327 4.7 29.0 1.0 N A:LYS143 4.8 21.8 1.0 C A:CYS100 4.8 24.8 1.0 N A:TRP102 4.8 22.3 1.0 CA A:CYS150 4.8 17.4 1.0 C A:TRP102 4.9 23.8 1.0 CA A:CYS117 4.9 19.2 1.0 CA A:TRP102 5.0 18.6 1.0 O A:CYS100 5.0 26.2 1.0 CB A:SER142 5.0 20.8 1.0

Zinc binding site 2 out of 2 in the TRAPPC3 From Thorarchaeota AB25


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of TRAPPC3 From Thorarchaeota AB25 within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn201 b:27.7 occ:0.95 SG B:CYS117 2.3 22.1 1.0 SG B:CYS103 2.4 26.6 1.0 SG B:CYS150 2.4 25.6 1.0 SG B:CYS100 2.4 24.5 1.0 CB B:CYS100 2.9 26.5 1.0 CB B:CYS117 3.5 21.0 1.0 CB B:CYS103 3.5 25.1 1.0 CB B:CYS150 3.5 27.1 1.0 N B:CYS103 3.9 21.7 1.0 OG B:SER142 4.1 23.8 1.0 NE2 B:GLN139 4.1 23.9 1.0 CA B:CYS103 4.4 23.8 1.0 CA B:CYS100 4.4 27.3 1.0 CB B:TRP102 4.5 18.9 1.0 CZ2 B:TRP152 4.5 20.4 1.0 CH2 B:TRP152 4.6 23.9 1.0 O B:HOH338 4.7 35.3 1.0 O B:HOH314 4.7 35.6 1.0 N B:TRP102 4.8 20.9 1.0 N B:LYS143 4.8 25.5 1.0 C B:CYS100 4.8 27.7 1.0 C B:TRP102 4.8 20.5 1.0 CA B:CYS117 4.8 18.4 1.0 CB B:SER142 4.9 25.5 1.0 CA B:CYS150 4.9 26.1 1.0 CA B:TRP102 4.9 19.7 1.0

L.T.Tran, R.C.Robinson. TRAPPC3 From Thorarchaeota AB25 To Be Published.