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Zinc in PDB 7vqf: Phenol Binding Protein, Mopr

Protein crystallography data

The structure of Phenol Binding Protein, Mopr, PDB code: 7vqf was solved by J.Singh, S.Ray, R.Anand, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.30 / 2.30
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 62.2, 118.3, 56.7, 90, 90, 90
R / Rfree (%) 22.3 / 26.4

Zinc Binding Sites:

The binding sites of Zinc atom in the Phenol Binding Protein, Mopr (pdb code 7vqf). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Phenol Binding Protein, Mopr, PDB code: 7vqf:

Zinc binding site 1 out of 1 in 7vqf

Go back to Zinc Binding Sites List in 7vqf
Zinc binding site 1 out of 1 in the Phenol Binding Protein, Mopr


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Phenol Binding Protein, Mopr within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn303

b:34.1
occ:1.00
OE2 A:GLU178 1.9 28.7 1.0
SG A:CYS181 2.3 31.3 1.0
SG A:CYS155 2.3 28.3 1.0
SG A:CYS189 2.3 29.3 1.0
CD A:GLU178 3.0 29.1 1.0
CB A:CYS181 3.2 25.5 1.0
CB A:CYS189 3.3 30.3 1.0
CB A:CYS155 3.3 22.0 1.0
OE1 A:GLU178 3.4 30.8 1.0
CA A:CYS181 3.6 28.3 1.0
N A:VAL182 4.1 36.2 1.0
N A:CYS155 4.1 27.4 1.0
CG A:GLU178 4.2 28.0 1.0
CB A:ALA140 4.2 26.0 1.0
C A:CYS181 4.3 36.6 1.0
CA A:CYS155 4.3 28.0 1.0
O A:HIS180 4.3 28.9 1.0
OG A:SER137 4.4 31.4 1.0
CA A:CYS189 4.5 27.6 1.0
N A:ALA154 4.7 26.2 1.0
CB A:SER137 4.7 27.7 1.0
N A:CYS181 4.8 33.5 1.0
CE3 A:TRP134 4.8 20.1 1.0
C A:HIS180 5.0 37.8 1.0

Reference:

J.Singh, M.Sahil, S.Ray, C.Dcosta, S.Panjikar, G.Krishnamoorthy, J.Mondal, R.Anand. Phenol Sensing in Nature Is Modulated Via A Conformational Switch Governed By Dynamic Allostery. J.Biol.Chem. V. 298 02399 2022.
ISSN: ESSN 1083-351X
PubMed: 35988639
DOI: 10.1016/J.JBC.2022.102399
Page generated: Fri Aug 22 05:46:39 2025

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