Zinc in PDB 7vgq: Cryo-Em Structure of Machupo Virus Polymerase L in Complex with Matrix Protein Z

Enzymatic activity of Cryo-Em Structure of Machupo Virus Polymerase L in Complex with Matrix Protein Z

All present enzymatic activity of Cryo-Em Structure of Machupo Virus Polymerase L in Complex with Matrix Protein Z:
2.7.7.48;

Zinc Binding Sites:

The binding sites of Zinc atom in the Cryo-Em Structure of Machupo Virus Polymerase L in Complex with Matrix Protein Z (pdb code 7vgq). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Cryo-Em Structure of Machupo Virus Polymerase L in Complex with Matrix Protein Z, PDB code: 7vgq:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 7vgq

Go back to Zinc Binding Sites List in 7vgq
Zinc binding site 1 out of 2 in the Cryo-Em Structure of Machupo Virus Polymerase L in Complex with Matrix Protein Z


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of Machupo Virus Polymerase L in Complex with Matrix Protein Z within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn101

b:24.1
occ:1.00
SG B:CYS42 2.4 3.9 1.0
SG B:CYS41 2.4 4.6 1.0
SG B:CYS58 2.4 12.1 1.0
SG B:CYS61 2.4 8.3 1.0
CB B:CYS61 3.0 8.3 1.0
CB B:CYS42 3.0 3.9 1.0
N B:CYS42 3.7 3.9 1.0
CB B:CYS58 3.9 12.1 1.0
CA B:CYS42 4.0 3.9 1.0
N B:CYS61 4.0 8.3 1.0
CA B:CYS61 4.1 8.3 1.0
CB B:CYS41 4.1 4.6 1.0
CB B:CYS39 4.2 6.5 1.0
N B:CYS58 4.4 12.1 1.0
SG B:CYS39 4.4 6.5 1.0
CA B:CYS58 4.7 12.1 1.0
C B:CYS41 4.7 4.6 1.0
CA B:CYS41 4.9 4.6 1.0
O B:CYS58 5.0 12.1 1.0

Zinc binding site 2 out of 2 in 7vgq

Go back to Zinc Binding Sites List in 7vgq
Zinc binding site 2 out of 2 in the Cryo-Em Structure of Machupo Virus Polymerase L in Complex with Matrix Protein Z


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Cryo-Em Structure of Machupo Virus Polymerase L in Complex with Matrix Protein Z within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn102

b:19.7
occ:1.00
NE2 B:HIS55 2.2 9.9 1.0
CE1 B:HIS55 2.3 9.9 1.0
SG B:CYS75 2.5 11.6 1.0
SG B:CYS72 2.7 13.3 1.0
CB B:CYS72 3.3 13.3 1.0
N B:CYS75 3.5 11.6 1.0
CD2 B:HIS55 3.5 9.9 1.0
ND1 B:HIS55 3.6 9.9 1.0
CB B:CYS75 3.6 11.6 1.0
CB B:ILE74 4.1 8.5 1.0
CA B:CYS75 4.1 11.6 1.0
CG B:HIS55 4.2 9.9 1.0
C B:ILE74 4.4 8.5 1.0
N B:ILE74 4.4 8.5 1.0
CA B:ILE74 4.5 8.5 1.0
SG B:CYS52 4.5 10.7 1.0
O B:LYS77 4.6 10.7 1.0
N B:TRP76 4.7 10.2 1.0
C B:CYS75 4.8 11.6 1.0
CG2 B:ILE74 4.8 8.5 1.0
CA B:CYS72 4.8 13.3 1.0

Reference:

J.Ma, S.Zhang, X.Zhang. Structure of Machupo Virus Polymerase in Complex with Matrix Protein Z To Be Published.
Page generated: Fri Nov 5 17:02:48 2021

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