Atomistry » Zinc » PDB 7v2r-7vi8 » 7vgq
Atomistry »
  Zinc »
    PDB 7v2r-7vi8 »
      7vgq »

Zinc in PDB 7vgq: Cryo-Em Structure of Machupo Virus Polymerase L in Complex with Matrix Protein Z

Enzymatic activity of Cryo-Em Structure of Machupo Virus Polymerase L in Complex with Matrix Protein Z

All present enzymatic activity of Cryo-Em Structure of Machupo Virus Polymerase L in Complex with Matrix Protein Z:
2.7.7.48;

Zinc Binding Sites:

The binding sites of Zinc atom in the Cryo-Em Structure of Machupo Virus Polymerase L in Complex with Matrix Protein Z (pdb code 7vgq). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Cryo-Em Structure of Machupo Virus Polymerase L in Complex with Matrix Protein Z, PDB code: 7vgq:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 7vgq

Go back to Zinc Binding Sites List in 7vgq
Zinc binding site 1 out of 2 in the Cryo-Em Structure of Machupo Virus Polymerase L in Complex with Matrix Protein Z


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of Machupo Virus Polymerase L in Complex with Matrix Protein Z within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn101

b:24.1
occ:1.00
SG B:CYS42 2.4 3.9 1.0
SG B:CYS41 2.4 4.6 1.0
SG B:CYS58 2.4 12.1 1.0
SG B:CYS61 2.4 8.3 1.0
CB B:CYS61 3.0 8.3 1.0
CB B:CYS42 3.0 3.9 1.0
N B:CYS42 3.7 3.9 1.0
CB B:CYS58 3.9 12.1 1.0
CA B:CYS42 4.0 3.9 1.0
N B:CYS61 4.0 8.3 1.0
CA B:CYS61 4.1 8.3 1.0
CB B:CYS41 4.1 4.6 1.0
CB B:CYS39 4.2 6.5 1.0
N B:CYS58 4.4 12.1 1.0
SG B:CYS39 4.4 6.5 1.0
CA B:CYS58 4.7 12.1 1.0
C B:CYS41 4.7 4.6 1.0
CA B:CYS41 4.9 4.6 1.0
O B:CYS58 5.0 12.1 1.0

Zinc binding site 2 out of 2 in 7vgq

Go back to Zinc Binding Sites List in 7vgq
Zinc binding site 2 out of 2 in the Cryo-Em Structure of Machupo Virus Polymerase L in Complex with Matrix Protein Z


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Cryo-Em Structure of Machupo Virus Polymerase L in Complex with Matrix Protein Z within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn102

b:19.7
occ:1.00
NE2 B:HIS55 2.2 9.9 1.0
CE1 B:HIS55 2.3 9.9 1.0
SG B:CYS75 2.5 11.6 1.0
SG B:CYS72 2.7 13.3 1.0
CB B:CYS72 3.3 13.3 1.0
N B:CYS75 3.5 11.6 1.0
CD2 B:HIS55 3.5 9.9 1.0
ND1 B:HIS55 3.6 9.9 1.0
CB B:CYS75 3.6 11.6 1.0
CB B:ILE74 4.1 8.5 1.0
CA B:CYS75 4.1 11.6 1.0
CG B:HIS55 4.2 9.9 1.0
C B:ILE74 4.4 8.5 1.0
N B:ILE74 4.4 8.5 1.0
CA B:ILE74 4.5 8.5 1.0
SG B:CYS52 4.5 10.7 1.0
O B:LYS77 4.6 10.7 1.0
N B:TRP76 4.7 10.2 1.0
C B:CYS75 4.8 11.6 1.0
CG2 B:ILE74 4.8 8.5 1.0
CA B:CYS72 4.8 13.3 1.0

Reference:

J.Ma, S.Zhang, X.Zhang. Structure of Machupo Virus Polymerase in Complex with Matrix Protein Z To Be Published.
Page generated: Wed Oct 30 12:38:46 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy