Atomistry » Zinc » PDB 7txc-7uba » 7u5y
Atomistry »
  Zinc »
    PDB 7txc-7uba »
      7u5y »

Zinc in PDB 7u5y: Crystal Structure of Ribulose-Phosphate 3-Epimerase From Pseudomonas Aeruginosa

Enzymatic activity of Crystal Structure of Ribulose-Phosphate 3-Epimerase From Pseudomonas Aeruginosa

All present enzymatic activity of Crystal Structure of Ribulose-Phosphate 3-Epimerase From Pseudomonas Aeruginosa:
5.1.3.1;

Protein crystallography data

The structure of Crystal Structure of Ribulose-Phosphate 3-Epimerase From Pseudomonas Aeruginosa, PDB code: 7u5y was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.03 / 2.55
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 99.01, 110.13, 126.76, 90, 90, 90
R / Rfree (%) 20.3 / 25.8

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Ribulose-Phosphate 3-Epimerase From Pseudomonas Aeruginosa (pdb code 7u5y). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 6 binding sites of Zinc where determined in the Crystal Structure of Ribulose-Phosphate 3-Epimerase From Pseudomonas Aeruginosa, PDB code: 7u5y:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6;

Zinc binding site 1 out of 6 in 7u5y

Go back to Zinc Binding Sites List in 7u5y
Zinc binding site 1 out of 6 in the Crystal Structure of Ribulose-Phosphate 3-Epimerase From Pseudomonas Aeruginosa


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Ribulose-Phosphate 3-Epimerase From Pseudomonas Aeruginosa within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn300

b:55.0
occ:0.50
 OD1 A:ASP36 2.1 49.2 1.0
ND1 A:HIS68 2.3 46.3 1.0
NE2 A:HIS34 2.3 48.0 1.0
OD2 A:ASP177 2.8 54.9 1.0
CG A:ASP36 3.2 52.4 1.0
CD2 A:HIS34 3.2 48.0 1.0
CE1 A:HIS68 3.3 48.2 1.0
CG A:HIS68 3.3 46.4 1.0
CE1 A:HIS34 3.3 47.0 1.0
O A:HOH405 3.3 49.6 1.0
CB A:HIS68 3.5 44.8 1.0
OD2 A:ASP36 3.6 55.4 1.0
CG A:ASP177 4.0 53.2 1.0
CE A:MET70 4.3 48.7 1.0
NE2 A:HIS68 4.4 46.5 1.0
CG A:HIS34 4.4 51.1 1.0
ND1 A:HIS34 4.4 48.5 1.0
CD2 A:HIS68 4.4 46.7 1.0
CD2 A:LEU137 4.4 42.7 1.0
CB A:ASP36 4.5 50.4 1.0
CB A:ASP177 4.7 50.4 1.0
CA A:ASP36 4.8 48.3 1.0
SD A:MET139 4.9 55.0 1.0
OD1 A:ASP177 4.9 52.9 1.0

Zinc binding site 2 out of 6 in 7u5y

Go back to Zinc Binding Sites List in 7u5y
Zinc binding site 2 out of 6 in the Crystal Structure of Ribulose-Phosphate 3-Epimerase From Pseudomonas Aeruginosa


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Ribulose-Phosphate 3-Epimerase From Pseudomonas Aeruginosa within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn300

b:81.0
occ:0.57
 OD1 B:ASP36 2.2 69.8 1.0
NE2 B:HIS34 2.3 63.0 1.0
ND1 B:HIS68 2.3 62.3 1.0
OD2 B:ASP177 2.8 69.2 1.0
CE1 B:HIS34 3.2 61.9 1.0
CE1 B:HIS68 3.2 57.9 1.0
CG B:ASP36 3.3 67.7 1.0
CG B:HIS68 3.3 57.9 1.0
CD2 B:HIS34 3.3 61.6 1.0
O B:HOH418 3.5 63.9 1.0
CB B:HIS68 3.6 60.5 1.0
OD2 B:ASP36 3.7 70.6 1.0
CG B:ASP177 3.9 71.0 1.0
CD2 B:LEU137 4.2 58.7 1.0
ND1 B:HIS34 4.4 62.0 1.0
NE2 B:HIS68 4.4 59.7 1.0
CE B:MET70 4.4 61.1 1.0
CD2 B:HIS68 4.4 58.1 1.0
CG B:HIS34 4.5 64.6 1.0
CB B:ASP177 4.5 67.7 1.0
CB B:ASP36 4.5 64.1 1.0
SD B:MET139 4.6 63.8 1.0
CA B:ASP36 4.9 63.0 1.0
OD1 B:ASP177 4.9 73.0 1.0

Zinc binding site 3 out of 6 in 7u5y

Go back to Zinc Binding Sites List in 7u5y
Zinc binding site 3 out of 6 in the Crystal Structure of Ribulose-Phosphate 3-Epimerase From Pseudomonas Aeruginosa


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of Ribulose-Phosphate 3-Epimerase From Pseudomonas Aeruginosa within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn300

b:116.1
occ:0.45
 OD1 C:ASP36 2.1 63.2 1.0
NE2 C:HIS34 2.3 64.5 1.0
ND1 C:HIS68 2.3 61.2 1.0
OD2 C:ASP177 3.0 72.5 1.0
CG C:HIS68 3.1 53.8 1.0
CB C:HIS68 3.2 52.2 1.0
CE1 C:HIS34 3.2 63.0 1.0
CG C:ASP36 3.2 66.1 1.0
CD2 C:HIS34 3.3 62.6 1.0
CE1 C:HIS68 3.4 54.6 1.0
OD2 C:ASP36 3.8 68.8 1.0
CG C:ASP177 4.1 73.0 1.0
CE C:MET70 4.2 51.0 1.0
CD2 C:LEU137 4.2 57.7 1.0
CD2 C:HIS68 4.3 55.0 1.0
ND1 C:HIS34 4.4 60.2 1.0
CB C:ASP36 4.4 61.9 1.0
NE2 C:HIS68 4.5 54.5 1.0
CG C:HIS34 4.5 60.1 1.0
CA C:ASP36 4.7 56.5 1.0
CA C:HIS68 4.7 53.2 1.0
CB C:ASP177 4.9 64.5 1.0
OD1 C:ASP177 4.9 70.9 1.0

Zinc binding site 4 out of 6 in 7u5y

Go back to Zinc Binding Sites List in 7u5y
Zinc binding site 4 out of 6 in the Crystal Structure of Ribulose-Phosphate 3-Epimerase From Pseudomonas Aeruginosa


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Crystal Structure of Ribulose-Phosphate 3-Epimerase From Pseudomonas Aeruginosa within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn300

b:72.2
occ:0.58
 OD1 D:ASP36 2.1 64.9 1.0
NE2 D:HIS34 2.3 61.4 1.0
ND1 D:HIS68 2.3 58.0 1.0
OD2 D:ASP177 2.9 67.1 1.0
CG D:HIS68 3.2 55.0 1.0
CE1 D:HIS34 3.3 55.1 1.0
CG D:ASP36 3.3 63.6 1.0
CD2 D:HIS34 3.3 60.2 1.0
CE1 D:HIS68 3.4 54.0 1.0
CB D:HIS68 3.4 52.5 1.0
OD2 D:ASP36 3.8 67.0 1.0
CG D:ASP177 4.1 63.8 1.0
CE D:MET70 4.4 51.6 1.0
CD2 D:LEU137 4.4 52.4 1.0
CD2 D:HIS68 4.4 50.7 1.0
ND1 D:HIS34 4.4 57.3 1.0
NE2 D:HIS68 4.4 49.6 1.0
CG D:HIS34 4.5 60.3 1.0
CB D:ASP36 4.5 57.9 1.0
CA D:ASP36 4.7 56.7 1.0
CB D:ASP177 4.8 58.6 1.0
CA D:HIS68 4.9 50.3 1.0
OD1 D:ASP177 4.9 64.8 1.0
SD D:MET139 5.0 60.8 1.0

Zinc binding site 5 out of 6 in 7u5y

Go back to Zinc Binding Sites List in 7u5y
Zinc binding site 5 out of 6 in the Crystal Structure of Ribulose-Phosphate 3-Epimerase From Pseudomonas Aeruginosa


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Crystal Structure of Ribulose-Phosphate 3-Epimerase From Pseudomonas Aeruginosa within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Zn300

b:94.0
occ:0.53
 OD1 E:ASP36 2.2 72.8 1.0
NE2 E:HIS34 2.3 71.0 1.0
ND1 E:HIS68 2.3 70.6 1.0
OD2 E:ASP177 3.0 78.5 1.0
CG E:ASP36 3.2 73.6 1.0
CD2 E:HIS34 3.3 69.1 1.0
CE1 E:HIS68 3.3 65.3 1.0
CE1 E:HIS34 3.3 70.9 1.0
CG E:HIS68 3.3 64.0 1.0
CB E:HIS68 3.5 64.4 1.0
OD2 E:ASP36 3.6 80.7 1.0
CG E:ASP177 4.0 77.6 1.0
CD2 E:LEU137 4.1 68.7 1.0
ND1 E:HIS34 4.4 70.8 1.0
NE2 E:HIS68 4.4 63.0 1.0
CG E:HIS34 4.4 70.0 1.0
CD2 E:HIS68 4.4 61.9 1.0
CB E:ASP177 4.5 76.5 1.0
CB E:ASP36 4.5 67.6 1.0
CE E:MET70 4.6 59.7 1.0
SD E:MET139 4.8 74.9 1.0
CA E:ASP36 4.9 63.9 1.0

Zinc binding site 6 out of 6 in 7u5y

Go back to Zinc Binding Sites List in 7u5y
Zinc binding site 6 out of 6 in the Crystal Structure of Ribulose-Phosphate 3-Epimerase From Pseudomonas Aeruginosa


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Crystal Structure of Ribulose-Phosphate 3-Epimerase From Pseudomonas Aeruginosa within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Zn300

b:77.5
occ:0.49
 OD1 F:ASP36 2.2 68.7 1.0
ND1 F:HIS68 2.3 67.0 1.0
NE2 F:HIS34 2.3 70.8 1.0
OD2 F:ASP177 2.7 75.5 1.0
CD2 F:HIS34 3.2 70.4 1.0
CG F:ASP36 3.3 68.3 1.0
CE1 F:HIS68 3.3 61.4 1.0
CG F:HIS68 3.3 61.7 1.0
CE1 F:HIS34 3.4 70.4 1.0
CB F:HIS68 3.5 61.6 1.0
OD2 F:ASP36 3.6 77.0 1.0
CG F:ASP177 3.9 73.8 1.0
CD2 F:LEU137 4.2 64.1 1.0
NE2 F:HIS68 4.4 60.7 1.0
CG F:HIS34 4.4 71.8 1.0
CD2 F:HIS68 4.4 58.3 1.0
CE F:MET70 4.4 59.6 1.0
ND1 F:HIS34 4.4 71.4 1.0
CB F:ASP177 4.5 70.0 1.0
CB F:ASP36 4.6 64.0 1.0
OD1 F:ASP177 4.8 76.0 1.0
SD F:MET139 4.9 64.8 1.0
CA F:ASP36 4.9 62.9 1.0

Reference:

J.Abendroth, D.R.Davies, D.D.Lorimer, P.S.Horanyi, T.E.Edwards. Crystal Structure of Ribulose-Phosphate 3-Epimerase From Pseudomonas Aeruginosa To Be Published.
Page generated: Wed Oct 30 11:55:59 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy