Zinc in PDB 7u5q: Crystal Structure of Transcriptional Regulator, Gntr Family, From Brucella Melitensis

The structure of Crystal Structure of Transcriptional Regulator, Gntr Family, From Brucella Melitensis, PDB code: 7u5q was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.85 / 3.00
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	79.32, 83.35, 116.1, 90, 90, 90
R / Rfree (%)	18.8 / 23.4

The structure of Crystal Structure of Transcriptional Regulator, Gntr Family, From Brucella Melitensis also contains other interesting chemical elements:

Bromine

(Br)

1 atom

The binding sites of Zinc atom in the Crystal Structure of Transcriptional Regulator, Gntr Family, From Brucella Melitensis (pdb code 7u5q). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of Transcriptional Regulator, Gntr Family, From Brucella Melitensis, PDB code: 7u5q:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of Transcriptional Regulator, Gntr Family, From Brucella Melitensis


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Transcriptional Regulator, Gntr Family, From Brucella Melitensis within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn300 b:125.5 occ:1.00 NE2 A:HIS237 2.3 76.7 1.0 NE2 A:HIS215 2.3 76.5 1.0 NE2 A:HIS171 2.3 94.7 1.0 OD1 A:ASP167 2.4 90.6 1.0 CE1 A:HIS237 2.9 94.1 1.0 CG A:ASP167 3.2 89.2 1.0 CE1 A:HIS215 3.2 79.9 1.0 CD2 A:HIS171 3.2 88.1 1.0 OD2 A:ASP167 3.2 92.8 1.0 CE1 A:HIS171 3.3 88.8 1.0 CD2 A:HIS215 3.4 77.6 1.0 CD2 A:HIS237 3.5 83.3 1.0 NH2 A:ARG198 4.0 117.8 1.0 ND1 A:HIS237 4.1 91.7 1.0 ND1 A:HIS215 4.3 82.0 1.0 CG1 A:VAL211 4.4 83.7 1.0 CG A:HIS237 4.4 85.0 1.0 CG A:HIS171 4.4 82.7 1.0 ND1 A:HIS171 4.4 89.9 1.0 CG A:HIS215 4.5 79.3 1.0 NH1 A:ARG198 4.5 122.2 1.0 CB A:ASP167 4.6 84.7 1.0 O A:ASP167 4.8 88.1 1.0 CZ A:ARG198 4.8 129.8 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of Transcriptional Regulator, Gntr Family, From Brucella Melitensis


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Transcriptional Regulator, Gntr Family, From Brucella Melitensis within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn301 b:109.7 occ:1.00 OD1 B:ASP167 2.2 83.5 1.0 NE2 B:HIS215 2.3 79.2 1.0 NE2 B:HIS237 2.3 87.2 1.0 NE2 B:HIS171 2.3 85.6 1.0 CE1 B:HIS237 2.9 88.3 1.0 CG B:ASP167 3.1 84.4 1.0 CE1 B:HIS215 3.1 79.3 1.0 CD2 B:HIS171 3.2 81.2 1.0 CE1 B:HIS171 3.3 80.9 1.0 OD2 B:ASP167 3.3 88.2 1.0 CD2 B:HIS215 3.3 74.9 1.0 CD2 B:HIS237 3.5 86.6 1.0 ND1 B:HIS237 4.1 85.2 1.0 ND1 B:HIS215 4.3 76.9 1.0 CG1 B:VAL211 4.3 72.7 1.0 ND1 B:HIS171 4.4 86.0 1.0 CG B:HIS171 4.4 88.6 1.0 CG B:HIS215 4.4 77.6 1.0 CG B:HIS237 4.4 87.2 1.0 CB B:ASP167 4.5 84.5 1.0 O B:ASP167 4.6 85.6 1.0 CA B:ASP167 4.9 85.2 1.0 C B:ASP167 5.0 88.5 1.0 CD2 B:PHE170 5.0 73.3 1.0

J.Abendroth, D.R.Davies, D.D.Lorimer, P.S.Horanyi, T.E.Edwards. Crystal Structure of Transcriptional Regulator, Gntr Family, From Brucella Melitensis To Be Published.