Zinc in PDB 7u2r: Structure of Paenibacillus Sp. J14 APYC1

The structure of Structure of Paenibacillus Sp. J14 APYC1, PDB code: 7u2r was solved by S.J.Hobbs, T.Wein, A.Lu, B.R.Morehouse, J.Schnabel, R.Sorek, P.J.Kranzusch, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	38.14 / 1.85
Space group	P 61 2 2
Cell size a, b, c (Å), α, β, γ (°)	102.868, 102.868, 147.619, 90, 90, 120
R / Rfree (%)	17.7 / 20

The binding sites of Zinc atom in the Structure of Paenibacillus Sp. J14 APYC1 (pdb code 7u2r). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Structure of Paenibacillus Sp. J14 APYC1, PDB code: 7u2r:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Structure of Paenibacillus Sp. J14 APYC1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of Paenibacillus Sp. J14 APYC1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn301 b:35.1 occ:1.00 NE2 A:HIS66 2.2 30.0 1.0 O A:HOH436 2.2 31.8 1.0 NE2 A:HIS219 2.2 33.0 1.0 OD2 A:ASP165 2.3 35.5 1.0 OD2 A:ASP65 2.3 30.0 1.0 CG A:ASP165 3.0 38.6 1.0 CD2 A:HIS66 3.1 30.4 1.0 OD1 A:ASP165 3.1 38.3 1.0 CE1 A:HIS219 3.1 33.6 1.0 CG A:ASP65 3.2 32.9 1.0 CD2 A:HIS219 3.2 34.5 1.0 CE1 A:HIS66 3.3 36.1 1.0 OD1 A:ASP65 3.5 29.1 1.0 ZN A:ZN302 3.5 36.1 1.0 O A:HOH474 4.1 27.8 1.0 NE2 A:HIS61 4.2 32.5 1.0 ND1 A:HIS219 4.3 32.6 1.0 CG A:HIS66 4.3 32.8 1.0 ND1 A:HIS66 4.3 34.6 1.0 CG A:HIS219 4.3 31.9 1.0 CE1 A:HIS61 4.4 38.1 1.0 CB A:ASP165 4.4 35.5 1.0 CB A:ASP65 4.5 25.9 1.0 CE1 A:HIS198 4.6 33.3 1.0 O A:HOH545 4.6 46.2 1.0 ND1 A:HIS63 4.9 29.7 1.0 CB A:ALA13 4.9 31.0 1.0

Zinc binding site 2 out of 2 in the Structure of Paenibacillus Sp. J14 APYC1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of Paenibacillus Sp. J14 APYC1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn302 b:36.1 occ:1.00 ND1 A:HIS63 2.1 29.7 1.0 NE2 A:HIS145 2.2 38.2 1.0 NE2 A:HIS61 2.2 32.5 1.0 OD2 A:ASP165 2.4 35.5 1.0 O A:HOH436 2.5 31.8 1.0 CE1 A:HIS63 2.8 37.3 1.0 CD2 A:HIS61 2.9 37.1 1.0 CD2 A:HIS145 3.0 39.4 1.0 CE1 A:HIS145 3.2 43.8 1.0 CG A:HIS63 3.2 34.4 1.0 CE1 A:HIS61 3.4 38.1 1.0 CG A:ASP165 3.5 38.6 1.0 ZN A:ZN301 3.5 35.1 1.0 CB A:HIS63 3.7 31.1 1.0 CB A:ASP165 3.9 35.5 1.0 NE2 A:HIS63 4.0 36.0 1.0 NE2 A:HIS66 4.2 30.0 1.0 CD2 A:HIS66 4.2 30.4 1.0 CG A:HIS61 4.2 36.0 1.0 O A:HOH545 4.2 46.2 1.0 CG A:HIS145 4.2 40.6 1.0 CD2 A:HIS63 4.2 36.5 1.0 ND1 A:HIS145 4.2 38.8 1.0 ND1 A:HIS61 4.3 34.6 1.0 OD1 A:ASP165 4.5 38.3 1.0 OD1 A:ASP65 4.6 29.1 1.0 CE1 A:HIS198 4.7 33.3 1.0

S.J.Hobbs, T.Wein, A.Lu, B.R.Morehouse, J.Schnabel, A.Leavitt, E.Yirmiya, R.Sorek, P.J.Kranzusch. Phage Anti-Cbass and Anti-Pycsar Nucleases Subvert Bacterial Immunity. Nature V. 605 522 2022.
ISSN: ESSN 1476-4687
PubMed: 35395152
DOI: 10.1038/S41586-022-04716-Y