Zinc in PDB 7tgq: Zinc Finger Antiviral Protein (Zap) Central Domain Bound to Adp-Ribose

Protein crystallography data

The structure of Zinc Finger Antiviral Protein (Zap) Central Domain Bound to Adp-Ribose, PDB code: 7tgq was solved by O.P.Pornillos, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.71 / 2.00
Space group P 3 2 1
Cell size a, b, c (Å), α, β, γ (°) 89.958, 89.958, 52.807, 90, 90, 120
R / Rfree (%) 23.8 / 27.3

Zinc Binding Sites:

The binding sites of Zinc atom in the Zinc Finger Antiviral Protein (Zap) Central Domain Bound to Adp-Ribose (pdb code 7tgq). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Zinc Finger Antiviral Protein (Zap) Central Domain Bound to Adp-Ribose, PDB code: 7tgq:

Zinc binding site 1 out of 1 in 7tgq

Go back to Zinc Binding Sites List in 7tgq
Zinc binding site 1 out of 1 in the Zinc Finger Antiviral Protein (Zap) Central Domain Bound to Adp-Ribose


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Zinc Finger Antiviral Protein (Zap) Central Domain Bound to Adp-Ribose within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn701

b:35.6
occ:1.00
NE2 A:HIS531 1.9 21.6 1.0
SG A:CYS521 2.3 38.9 1.0
SG A:CYS527 2.3 48.7 1.0
SG A:CYS513 2.4 28.4 1.0
CE1 A:HIS531 2.8 30.9 1.0
HB2 A:CYS527 2.9 73.5 1.0
HE1 A:HIS531 2.9 37.1 1.0
HB2 A:CYS521 3.0 47.8 1.0
HB2 A:CYS513 3.0 32.1 1.0
CB A:CYS527 3.0 61.2 1.0
CD2 A:HIS531 3.0 30.1 1.0
HB3 A:CYS527 3.1 73.5 1.0
CB A:CYS521 3.2 39.8 1.0
CB A:CYS513 3.2 26.7 1.0
HD2 A:HIS531 3.3 36.2 1.0
HB3 A:CYS521 3.4 47.8 1.0
HB3 A:CYS513 3.5 32.1 1.0
HB2 A:LYS529 3.6 51.6 1.0
HB2 A:HIS516 3.9 32.8 1.0
ND1 A:HIS531 3.9 28.4 1.0
HB2 A:LEU523 4.1 65.1 1.0
CG A:HIS531 4.1 28.9 1.0
HB2 A:ASP515 4.3 34.7 1.0
H A:HIS516 4.3 29.2 1.0
CA A:CYS527 4.5 61.2 1.0
H A:LYS529 4.5 55.8 1.0
CA A:CYS521 4.5 36.5 1.0
HG3 A:LYS529 4.6 51.9 1.0
CB A:LYS529 4.6 42.9 1.0
HD12 A:LEU523 4.6 74.7 1.0
HA A:CYS521 4.6 43.8 1.0
HD1 A:HIS531 4.7 34.2 1.0
CA A:CYS513 4.7 26.3 1.0
CB A:HIS516 4.7 27.3 1.0
HD2 A:LYS529 4.7 46.2 1.0
HA A:CYS527 4.7 73.5 1.0
HB3 A:HIS516 4.8 32.8 1.0
HA A:CYS513 4.8 31.6 1.0
N A:HIS516 4.9 24.2 1.0

Reference:

G.Xue, O.Pornillos. Zinc Finger Antiviral Protein (Zap) Central Domain To Be Published.
Page generated: Sat Apr 8 03:28:44 2023

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