Zinc in PDB 7prv: The Glucocorticoid Receptor in Complex with Fluticasone Furoate, A PGC1A Coactivator Fragment and Sgk 23BP

Protein crystallography data

The structure of The Glucocorticoid Receptor in Complex with Fluticasone Furoate, A PGC1A Coactivator Fragment and Sgk 23BP, PDB code: 7prv was solved by S.Postel, K.Edman, L.Wissler, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 68.68 / 2.70
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 79.674, 119.725, 135.527, 90, 90, 90
R / Rfree (%) 21.4 / 25.3

Other elements in 7prv:

The structure of The Glucocorticoid Receptor in Complex with Fluticasone Furoate, A PGC1A Coactivator Fragment and Sgk 23BP also contains other interesting chemical elements:

Fluorine (F) 6 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the The Glucocorticoid Receptor in Complex with Fluticasone Furoate, A PGC1A Coactivator Fragment and Sgk 23BP (pdb code 7prv). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the The Glucocorticoid Receptor in Complex with Fluticasone Furoate, A PGC1A Coactivator Fragment and Sgk 23BP, PDB code: 7prv:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in 7prv

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Zinc binding site 1 out of 4 in the The Glucocorticoid Receptor in Complex with Fluticasone Furoate, A PGC1A Coactivator Fragment and Sgk 23BP


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The Glucocorticoid Receptor in Complex with Fluticasone Furoate, A PGC1A Coactivator Fragment and Sgk 23BP within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn801

b:94.4
occ:1.00
SG A:CYS424 2.2 96.0 1.0
SG A:CYS438 2.2 98.6 1.0
SG A:CYS441 2.2 86.0 1.0
SG A:CYS421 2.4 102.8 1.0
CB A:CYS441 3.1 87.6 1.0
CB A:CYS421 3.3 103.1 1.0
CB A:CYS424 3.4 96.3 1.0
CB A:CYS438 3.6 99.4 1.0
N A:CYS424 3.7 95.9 1.0
N A:CYS441 4.0 90.2 1.0
NH1 A:ARG470 4.0 88.7 1.0
N A:CYS438 4.0 100.5 1.0
CA A:CYS441 4.1 88.5 1.0
CA A:CYS424 4.1 96.8 1.0
CA A:CYS438 4.4 99.8 1.0
CB A:VAL423 4.5 95.7 1.0
OG A:SER440 4.6 96.8 1.0
CB A:ASP426 4.6 108.8 1.0
O A:CYS438 4.6 99.5 1.0
CA A:CYS421 4.7 103.6 1.0
C A:VAL423 4.8 95.8 1.0
C A:CYS424 4.8 99.1 1.0
NH2 A:ARG477 4.8 68.9 1.0
C A:CYS438 4.8 99.5 1.0
CD A:ARG470 4.8 80.5 1.0
N A:SER425 4.9 100.7 1.0
N A:ASP426 4.9 106.0 1.0

Zinc binding site 2 out of 4 in 7prv

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Zinc binding site 2 out of 4 in the The Glucocorticoid Receptor in Complex with Fluticasone Furoate, A PGC1A Coactivator Fragment and Sgk 23BP


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of The Glucocorticoid Receptor in Complex with Fluticasone Furoate, A PGC1A Coactivator Fragment and Sgk 23BP within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn802

b:58.2
occ:1.00
SG A:CYS473 2.3 59.9 1.0
SG A:CYS463 2.3 62.7 1.0
SG A:CYS457 2.4 63.3 1.0
SG A:CYS476 2.4 68.4 1.0
CB A:CYS473 3.1 60.8 1.0
CB A:CYS463 3.1 60.4 1.0
CB A:CYS476 3.3 64.8 1.0
CB A:CYS457 3.7 64.4 1.0
N A:CYS463 3.9 58.9 1.0
CA A:CYS463 4.1 59.9 1.0
N A:CYS476 4.2 63.3 1.0
CA A:CYS476 4.3 64.2 1.0
CA A:CYS457 4.4 65.0 1.0
N A:ASP462 4.5 55.9 1.0
CA A:CYS473 4.5 61.9 1.0
N A:GLY459 4.7 57.7 1.0
N A:ASN461 4.7 54.8 1.0
CA A:ASN461 4.7 54.2 1.0
N A:ALA458 4.8 62.0 1.0
O A:HOH904 4.9 70.4 1.0
C A:ASN461 4.9 55.5 1.0
C A:CYS457 5.0 63.6 1.0
C A:ASP462 5.0 58.5 1.0

Zinc binding site 3 out of 4 in 7prv

Go back to Zinc Binding Sites List in 7prv
Zinc binding site 3 out of 4 in the The Glucocorticoid Receptor in Complex with Fluticasone Furoate, A PGC1A Coactivator Fragment and Sgk 23BP


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of The Glucocorticoid Receptor in Complex with Fluticasone Furoate, A PGC1A Coactivator Fragment and Sgk 23BP within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn801

b:77.0
occ:1.00
SG B:CYS424 2.2 69.7 1.0
SG B:CYS421 2.4 77.6 1.0
SG B:CYS438 2.4 97.3 1.0
SG B:CYS441 2.4 86.9 1.0
CB B:CYS441 3.1 89.5 1.0
CB B:CYS421 3.4 79.9 1.0
CB B:CYS424 3.4 71.8 1.0
CB B:CYS438 3.7 98.2 1.0
N B:CYS424 3.8 72.3 1.0
N B:CYS441 3.9 91.0 1.0
OG B:SER440 4.0 96.4 1.0
N B:CYS438 4.0 100.0 1.0
CA B:CYS441 4.1 90.5 1.0
CA B:CYS424 4.1 72.8 1.0
NH1 B:ARG470 4.2 69.5 1.0
CA B:CYS438 4.4 98.6 1.0
CB B:VAL423 4.6 73.1 1.0
CB B:ASP426 4.6 85.8 1.0
C B:CYS424 4.8 74.9 1.0
O B:CYS438 4.8 97.6 1.0
C B:VAL423 4.8 72.8 1.0
CA B:CYS421 4.8 81.4 1.0
C B:CYS438 4.9 97.6 1.0
NH2 B:ARG477 4.9 60.8 1.0
CB B:THR437 4.9 105.1 1.0
CD B:ARG470 4.9 63.2 1.0
N B:ASP426 5.0 82.4 1.0

Zinc binding site 4 out of 4 in 7prv

Go back to Zinc Binding Sites List in 7prv
Zinc binding site 4 out of 4 in the The Glucocorticoid Receptor in Complex with Fluticasone Furoate, A PGC1A Coactivator Fragment and Sgk 23BP


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of The Glucocorticoid Receptor in Complex with Fluticasone Furoate, A PGC1A Coactivator Fragment and Sgk 23BP within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn802

b:68.5
occ:1.00
SG B:CYS457 2.2 65.4 1.0
SG B:CYS463 2.2 65.3 1.0
SG B:CYS473 2.3 61.6 1.0
SG B:CYS476 2.3 66.9 1.0
CB B:CYS473 3.1 59.7 1.0
CB B:CYS476 3.2 65.1 1.0
CB B:CYS463 3.3 60.4 1.0
CB B:CYS457 3.4 71.5 1.0
O B:HOH903 4.1 47.5 1.0
N B:CYS463 4.1 60.5 1.0
CA B:CYS457 4.1 73.6 1.0
N B:CYS476 4.1 64.3 1.0
CA B:CYS476 4.2 65.0 1.0
CA B:CYS463 4.3 59.2 1.0
CA B:ASN461 4.5 66.3 1.0
CA B:CYS473 4.6 60.0 1.0
N B:ASN461 4.6 66.8 1.0
N B:ASP462 4.7 63.5 1.0
C B:CYS457 4.8 72.6 1.0
N B:GLY459 4.8 69.6 1.0
N B:ALA458 4.8 71.5 1.0
C B:ASN461 4.9 65.3 1.0
O B:HOH901 5.0 57.7 1.0

Reference:

S.Postel, L.Wissler, C.A.Johansson, A.Gunnarsson, E.Gordon, B.Collins, M.Castaldo, C.Kohler, D.Oling, P.Johansson, L.F.Roth, B.Beinsteiner, I.Dainty, S.Delaney, B.P.Klaholz, I.M.L.Billas, K.Edman. Quaternary Glucocorticoid Receptor Structure Highlights Allosteric Interdomain Communication Nat.Struct.Mol.Biol. 2023.
ISSN: ESSN 1545-9985
DOI: 10.1038/S41594-022-00914-4
Page generated: Sat Apr 8 01:31:14 2023

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