Zinc in PDB 7mk2: Cryoem Structure of NPR1

The binding sites of Zinc atom in the Cryoem Structure of NPR1 (pdb code 7mk2). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Cryoem Structure of NPR1, PDB code: 7mk2:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Cryoem Structure of NPR1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryoem Structure of NPR1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn701 b:51.5 occ:1.00 ND1 A:HIS157 2.1 43.7 1.0 SG A:CYS150 2.3 46.2 1.0 SG A:CYS160 2.3 39.7 1.0 SG A:CYS155 2.3 47.3 1.0 CE1 A:HIS157 2.7 43.7 1.0 CB A:CYS155 3.1 47.3 1.0 CB A:CYS160 3.2 39.7 1.0 CB A:CYS150 3.3 46.2 1.0 CG A:HIS157 3.3 43.7 1.0 CA A:HIS157 3.5 43.7 1.0 N A:CYS150 3.7 46.2 1.0 N A:HIS157 3.7 43.7 1.0 CB A:HIS157 4.0 43.7 1.0 NE2 A:HIS157 4.0 43.7 1.0 CA A:CYS150 4.1 46.2 1.0 CD2 A:HIS157 4.3 43.7 1.0 CA A:CYS155 4.5 47.3 1.0 CA A:CYS160 4.6 39.7 1.0 C A:CYS155 4.7 47.3 1.0 C A:HIS157 4.8 43.7 1.0 C A:GLU149 4.8 47.4 1.0 N A:CYS160 4.8 39.7 1.0 N A:CYS156 4.9 46.0 1.0 C A:CYS150 4.9 46.2 1.0 C A:CYS156 5.0 46.0 1.0 CA A:GLU149 5.0 47.4 1.0

Zinc binding site 2 out of 2 in the Cryoem Structure of NPR1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Cryoem Structure of NPR1 within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn701 b:45.9 occ:1.00 ND1 B:HIS157 2.1 42.1 1.0 SG B:CYS150 2.3 40.7 1.0 SG B:CYS155 2.3 39.1 1.0 SG B:CYS160 2.3 40.4 1.0 CE1 B:HIS157 2.7 42.1 1.0 CB B:CYS160 3.2 40.4 1.0 CB B:CYS150 3.3 40.7 1.0 CG B:HIS157 3.3 42.1 1.0 CB B:CYS155 3.4 39.1 1.0 N B:CYS150 3.6 40.7 1.0 CA B:HIS157 3.7 42.1 1.0 CB B:HIS157 4.0 42.1 1.0 NE2 B:HIS157 4.0 42.1 1.0 N B:HIS157 4.0 42.1 1.0 O B:CYS155 4.1 39.1 1.0 CA B:CYS150 4.1 40.7 1.0 CD2 B:HIS157 4.3 42.1 1.0 C B:CYS155 4.4 39.1 1.0 CA B:CYS155 4.5 39.1 1.0 CA B:CYS160 4.6 40.4 1.0 C B:GLU149 4.7 45.0 1.0 N B:ALA151 4.8 39.4 1.0 CA B:GLU149 4.9 45.0 1.0 N B:CYS160 5.0 40.4 1.0 C B:CYS150 5.0 40.7 1.0

S.Kumar, R.Zavaliev, Q.Wu, Y.Zhou, J.Cheng, L.Dillard, J.Powers, J.Withers, J.Zhao, Z.Guan, M.J.Borgnia, A.Bartesaghi, X.Dong, P.Zhou. Structural Basis of NPR1 in Activating Plant Immunity. Nature V. 605 561 2022.
ISSN: ESSN 1476-4687
PubMed: 35545668
DOI: 10.1038/S41586-022-04699-W