Atomistry » Zinc » PDB 7etc-7fa1 » 7f4g
Atomistry »
  Zinc »
    PDB 7etc-7fa1 »
      7f4g »

Zinc in PDB 7f4g: Structure of RPAP2-Bound Rna Polymerase II

Enzymatic activity of Structure of RPAP2-Bound Rna Polymerase II

All present enzymatic activity of Structure of RPAP2-Bound Rna Polymerase II:
2.7.7.6;

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure of RPAP2-Bound Rna Polymerase II (pdb code 7f4g). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 5 binding sites of Zinc where determined in the Structure of RPAP2-Bound Rna Polymerase II, PDB code: 7f4g:
Jump to Zinc binding site number: 1; 2; 3; 4; 5;

Zinc binding site 1 out of 5 in 7f4g

Go back to Zinc Binding Sites List in 7f4g
Zinc binding site 1 out of 5 in the Structure of RPAP2-Bound Rna Polymerase II


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of RPAP2-Bound Rna Polymerase II within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Zn201

b:107.6
occ:1.00
 SG I:CYS17 2.2 88.6 1.0
SG I:CYS39 2.3 97.0 1.0
SG I:CYS20 2.4 90.5 1.0
SG I:CYS42 2.8 101.3 1.0
CB I:CYS17 2.9 88.6 1.0
CB I:CYS39 3.0 97.0 1.0
CB I:CYS42 3.6 101.3 1.0
CB I:CYS20 3.7 90.5 1.0
N I:CYS20 3.8 90.5 1.0
CA I:CYS20 4.2 90.5 1.0
N I:CYS42 4.2 101.3 1.0
CA I:CYS17 4.3 88.6 1.0
CA I:CYS39 4.5 97.0 1.0
N I:ASN21 4.5 86.5 1.0
CA I:CYS42 4.5 101.3 1.0
CB I:TYR44 4.7 96.0 1.0
C I:ASN41 4.7 98.2 1.0
C I:CYS20 4.7 90.5 1.0
N I:ASN22 4.7 85.7 1.0
N I:GLU19 4.7 95.5 1.0
CB I:ASN41 4.8 98.2 1.0
CB I:GLU19 4.8 95.5 1.0
N I:ASN41 4.8 98.2 1.0
C I:GLU19 4.9 95.5 1.0
CB I:ASN22 4.9 85.7 1.0
CA I:ASN41 5.0 98.2 1.0

Zinc binding site 2 out of 5 in 7f4g

Go back to Zinc Binding Sites List in 7f4g
Zinc binding site 2 out of 5 in the Structure of RPAP2-Bound Rna Polymerase II


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of RPAP2-Bound Rna Polymerase II within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Zn202

b:97.9
occ:1.00
 SG I:CYS89 2.1 88.5 1.0
SG I:CYS114 2.2 73.8 1.0
SG I:CYS119 2.3 84.5 1.0
SG I:CYS86 2.3 86.9 1.0
CB I:CYS86 2.8 86.9 1.0
CB I:CYS114 2.9 73.8 1.0
CB I:CYS119 3.3 84.5 1.0
CB I:CYS89 3.7 88.5 1.0
N I:CYS89 4.0 88.5 1.0
CA I:CYS86 4.3 86.9 1.0
CA I:CYS114 4.3 73.8 1.0
CB I:HIS91 4.4 84.1 1.0
CA I:CYS89 4.4 88.5 1.0
CB I:HIS121 4.4 76.5 1.0
CA I:CYS119 4.7 84.5 1.0
CB I:LYS88 4.7 87.4 1.0
N I:HIS121 4.7 76.5 1.0
CB I:ALA116 4.8 82.0 1.0
N I:HIS91 4.8 84.1 1.0
C I:CYS114 4.9 73.8 1.0
C I:CYS86 4.9 86.9 1.0
C I:CYS119 5.0 84.5 1.0
C I:CYS89 5.0 88.5 1.0
N I:GLY120 5.0 78.4 1.0
N I:GLY90 5.0 87.6 1.0

Zinc binding site 3 out of 5 in 7f4g

Go back to Zinc Binding Sites List in 7f4g
Zinc binding site 3 out of 5 in the Structure of RPAP2-Bound Rna Polymerase II


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Structure of RPAP2-Bound Rna Polymerase II within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Zn101

b:54.8
occ:1.00
 SG J:CYS10 2.2 37.0 1.0
SG J:CYS45 2.3 40.1 1.0
SG J:CYS7 2.3 32.5 1.0
SG J:CYS44 2.3 40.0 1.0
CB J:CYS10 3.1 37.0 1.0
CB J:CYS7 3.2 32.5 1.0
N J:CYS45 3.5 40.1 1.0
CB J:CYS45 3.5 40.1 1.0
CA J:CYS45 3.7 40.1 1.0
N J:CYS10 3.7 37.0 1.0
CB J:CYS44 3.7 40.0 1.0
C J:CYS44 3.8 40.0 1.0
CA J:CYS10 4.0 37.0 1.0
O J:CYS44 4.2 40.0 1.0
NE J:ARG42 4.3 41.8 1.0
CA J:CYS44 4.4 40.0 1.0
NH2 J:ARG42 4.5 41.8 1.0
N J:GLY11 4.6 33.4 1.0
CA J:CYS7 4.6 32.5 1.0
CB J:THR9 4.6 34.8 1.0
C J:CYS10 4.7 37.0 1.0
C J:THR9 4.8 34.8 1.0
CB J:LYS12 4.8 35.0 1.0
N J:LYS12 4.9 35.0 1.0
CZ J:ARG42 4.9 41.8 1.0
C J:CYS7 4.9 32.5 1.0
CB J:ARG42 5.0 41.8 1.0
N J:THR9 5.0 34.8 1.0

Zinc binding site 4 out of 5 in 7f4g

Go back to Zinc Binding Sites List in 7f4g
Zinc binding site 4 out of 5 in the Structure of RPAP2-Bound Rna Polymerase II


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Structure of RPAP2-Bound Rna Polymerase II within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Zn101

b:115.6
occ:1.00
 O L:GLU38 1.9 94.6 1.0
C L:GLU38 2.1 94.6 1.0
CG L:GLU38 2.2 94.6 1.0
N L:CYS39 2.6 88.9 1.0
CB L:GLU38 3.0 94.6 1.0
CB L:CYS39 3.0 88.9 1.0
CA L:CYS39 3.0 88.9 1.0
CA L:GLU38 3.1 94.6 1.0
O L:ARG37 3.4 90.0 1.0
CD L:GLU38 3.5 94.6 1.0
SG L:CYS22 3.9 82.4 1.0
N L:GLU38 4.0 94.6 1.0
OE2 L:GLU38 4.0 94.6 1.0
C L:ARG37 4.1 90.0 1.0
OE1 L:GLU38 4.3 94.6 1.0
SG L:CYS36 4.5 84.4 1.0
SG L:CYS39 4.5 88.9 1.0
C L:CYS39 4.6 88.9 1.0
CB L:CYS22 4.6 82.4 1.0
CG2 L:THR24 5.0 82.6 1.0

Zinc binding site 5 out of 5 in 7f4g

Go back to Zinc Binding Sites List in 7f4g
Zinc binding site 5 out of 5 in the Structure of RPAP2-Bound Rna Polymerase II


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Structure of RPAP2-Bound Rna Polymerase II within 5.0Å range:
probe atom residue distance (Å) B Occ
R:Zn800

b:186.6
occ:1.00
 SG R:CYS140 2.2 175.8 1.0
SG R:CYS105 2.4 177.9 1.0
SG R:CYS100 2.4 173.1 1.0
SG R:CYS136 2.7 172.3 1.0
CB R:CYS105 2.7 177.9 1.0
CB R:CYS140 2.8 175.8 1.0
CB R:CYS100 3.1 173.1 1.0
OG R:SER137 3.9 173.1 1.0
CB R:CYS136 3.9 172.3 1.0
N R:CYS136 4.0 172.3 1.0
N R:SER137 4.1 173.1 1.0
CA R:CYS105 4.2 177.9 1.0
CA R:CYS140 4.3 175.8 1.0
CA R:CYS136 4.5 172.3 1.0
CA R:CYS100 4.5 173.1 1.0
C R:CYS105 4.7 177.9 1.0
CB R:TYR102 4.7 177.8 1.0
C R:CYS136 4.8 172.3 1.0
CB R:SER137 4.8 173.1 1.0
O R:SER137 4.8 173.1 1.0
CB R:LYS107 4.9 173.0 1.0
CA R:SER137 5.0 173.1 1.0
CD R:LYS107 5.0 173.0 1.0
CB R:PHE135 5.0 168.0 1.0

Reference:

X.Chen, Y.Qi, X.Wang, J.Li, D.Zhao, Y.Xu. Structure of RPAP2-Bound Rna Polymerase II To Be Published.
Page generated: Fri Aug 22 00:10:23 2025

Last articles

Zn in 7UBM
Zn in 7UAJ
Zn in 7UBK
Zn in 7UBL
Zn in 7UBJ
Zn in 7UBA
Zn in 7UAO
Zn in 7UAN
Zn in 7UAI
Zn in 7UAM
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy