Zinc in PDB 7f0u: Porcine Epidemic Diarrhea Virus Papain-Like Protease 2 C44S Mutant in Complex with Mono Ubiquitin

The structure of Porcine Epidemic Diarrhea Virus Papain-Like Protease 2 C44S Mutant in Complex with Mono Ubiquitin, PDB code: 7f0u was solved by H.F.Chu, T.H.Lin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.18 / 2.20
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	37.13, 86.451, 90.696, 90, 91.79, 90
R / Rfree (%)	22.6 / 26

The binding sites of Zinc atom in the Porcine Epidemic Diarrhea Virus Papain-Like Protease 2 C44S Mutant in Complex with Mono Ubiquitin (pdb code 7f0u). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Porcine Epidemic Diarrhea Virus Papain-Like Protease 2 C44S Mutant in Complex with Mono Ubiquitin, PDB code: 7f0u:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Porcine Epidemic Diarrhea Virus Papain-Like Protease 2 C44S Mutant in Complex with Mono Ubiquitin


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Porcine Epidemic Diarrhea Virus Papain-Like Protease 2 C44S Mutant in Complex with Mono Ubiquitin within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn301 b:78.8 occ:1.00 SG A:CYS126 1.7 87.3 1.0 SG A:CYS151 2.1 69.5 1.0 SG A:CYS125 2.3 55.2 1.0 CB A:HIS153 2.8 96.7 1.0 CB A:CYS151 3.1 80.1 1.0 CB A:CYS126 3.2 77.7 1.0 N A:HIS153 3.5 101.3 1.0 CG A:HIS153 3.6 97.4 1.0 ND1 A:HIS153 3.7 97.8 1.0 CA A:HIS153 3.7 98.1 1.0 N A:CYS126 3.8 69.6 1.0 CB A:CYS125 3.9 59.6 1.0 C A:CYS125 4.0 66.7 1.0 CA A:CYS126 4.1 70.6 1.0 CA A:CYS151 4.3 84.8 1.0 O A:CYS125 4.3 72.4 1.0 C A:CYS151 4.3 92.8 1.0 N A:PRO152 4.4 98.8 1.0 CD A:PRO152 4.4 98.8 1.0 C A:HIS153 4.4 98.5 1.0 N A:GLY154 4.5 98.6 1.0 CA A:CYS125 4.6 62.4 1.0 C A:PRO152 4.7 100.3 1.0 CD2 A:HIS153 4.8 99.9 1.0 CE1 A:HIS153 4.9 98.3 1.0 O A:CYS151 4.9 90.9 1.0

Zinc binding site 2 out of 2 in the Porcine Epidemic Diarrhea Virus Papain-Like Protease 2 C44S Mutant in Complex with Mono Ubiquitin


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Porcine Epidemic Diarrhea Virus Papain-Like Protease 2 C44S Mutant in Complex with Mono Ubiquitin within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn301 b:72.5 occ:1.00 SG B:CYS151 2.2 81.5 1.0 SG B:CYS126 2.2 50.6 1.0 ND1 B:HIS153 2.3 85.8 1.0 SG B:CYS125 2.3 49.7 1.0 CG B:HIS153 3.1 84.0 1.0 CB B:HIS153 3.3 80.8 1.0 CE1 B:HIS153 3.3 86.7 1.0 CB B:CYS126 3.3 49.4 1.0 CB B:CYS151 3.4 82.5 1.0 N B:HIS153 3.7 77.5 1.0 N B:CYS126 3.7 48.1 1.0 CB B:CYS125 3.7 50.3 1.0 C B:CYS125 3.9 49.5 1.0 CA B:HIS153 4.1 79.9 1.0 CA B:CYS126 4.1 49.6 1.0 CD2 B:HIS153 4.2 86.2 1.0 O B:CYS125 4.2 46.9 1.0 CD B:PRO152 4.3 71.5 1.0 NE2 B:HIS153 4.3 87.5 1.0 N B:PRO152 4.4 73.8 1.0 CA B:CYS125 4.4 50.4 1.0 OG1 B:THR121 4.6 59.1 1.0 CA B:CYS151 4.6 81.0 1.0 C B:CYS151 4.7 77.3 1.0 C B:PRO152 4.7 75.8 1.0 CG2 B:THR121 4.8 57.9 1.0 C B:HIS153 4.9 79.4 1.0 CB B:LEU155 4.9 86.4 1.0 CA B:PRO152 5.0 76.1 1.0

H.F.Chu, S.C.Cheng, C.Y.Sun, C.Y.Chou, T.H.Lin, W.Y.Chen. Structural and Biochemical Characterization of Pedv Papain-Like Protease 2 To Be Published.