Zinc in PDB 7emf: Human Mediator (Deletion of MED1-Idr) in A Tail-Extended Conformation

The binding sites of Zinc atom in the Human Mediator (Deletion of MED1-Idr) in A Tail-Extended Conformation (pdb code 7emf). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Human Mediator (Deletion of MED1-Idr) in A Tail-Extended Conformation, PDB code: 7emf:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Human Mediator (Deletion of MED1-Idr) in A Tail-Extended Conformation


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Human Mediator (Deletion of MED1-Idr) in A Tail-Extended Conformation within 5.0Å range: probe atom residue distance (Å) B Occ P:Zn901 b:92.9 occ:1.00 SG P:CYS829 2.4 67.2 1.0 SG P:CYS827 2.4 67.7 1.0 SG P:CYS798 2.4 61.3 1.0 SG P:CYS801 2.4 68.9 1.0 CB P:CYS827 3.0 67.7 1.0 CB P:CYS801 3.1 68.9 1.0 CB P:CYS798 3.2 61.3 1.0 CB P:CYS829 3.3 67.2 1.0 N P:CYS801 3.6 68.9 1.0 CA P:CYS801 3.9 68.9 1.0 N P:CYS829 3.9 67.2 1.0 CA P:CYS829 4.2 67.2 1.0 N P:GLY802 4.4 63.0 1.0 CA P:CYS827 4.4 67.7 1.0 SG P:CYS803 4.5 63.8 1.0 CA P:CYS798 4.6 61.3 1.0 N P:LEU828 4.7 69.2 1.0 C P:CYS801 4.7 68.9 1.0 N P:GLY830 4.7 62.6 1.0 N P:GLY831 4.7 62.3 1.0 C P:CYS829 4.8 67.2 1.0 N P:CYS803 4.8 63.8 1.0 C P:CYS827 4.8 67.7 1.0 C P:ARG800 4.8 67.3 1.0 CB P:CYS803 5.0 63.8 1.0 N P:ARG800 5.0 67.3 1.0

Zinc binding site 2 out of 2 in the Human Mediator (Deletion of MED1-Idr) in A Tail-Extended Conformation


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Human Mediator (Deletion of MED1-Idr) in A Tail-Extended Conformation within 5.0Å range: probe atom residue distance (Å) B Occ 0:Zn401 b:99.6 occ:1.00 CD2 0:HIS306 2.4 79.5 1.0 SG 0:CYS281 2.4 78.7 1.0 SG 0:CYS284 2.4 81.4 1.0 SG 0:CYS309 2.5 79.3 1.0 CB 0:CYS281 3.2 78.7 1.0 CG 0:HIS306 3.2 79.5 1.0 CB 0:CYS309 3.4 79.3 1.0 CB 0:HIS306 3.5 79.5 1.0 NE2 0:HIS306 3.5 79.5 1.0 CB 0:CYS284 3.6 81.4 1.0 N 0:HIS306 3.9 79.5 1.0 N 0:CYS284 4.0 81.4 1.0 CG 0:GLN289 4.2 84.2 1.0 CA 0:HIS306 4.3 79.5 1.0 CA 0:CYS284 4.4 81.4 1.0 ND1 0:HIS306 4.4 79.5 1.0 CE1 0:HIS306 4.6 79.5 1.0 CB 0:ARG283 4.6 78.8 1.0 CA 0:CYS281 4.7 78.7 1.0 O 0:HIS306 4.8 79.5 1.0 CA 0:CYS309 4.8 79.3 1.0 C 0:ARG283 4.9 78.8 1.0 N 0:ARG283 5.0 78.8 1.0

X.Chen, X.Yin, J.Li, Z.Wu, Y.Qi, X.Wang, W.Liu, Y.Xu. Structures of the Human Mediator and Mediator-Bound Preinitiation Complex To Be Published.