Zinc in PDB 7d7l: Viral Protease Complex Structure

All present enzymatic activity of Viral Protease Complex Structure:
3.4.19.121;

The structure of Viral Protease Complex Structure, PDB code: 7d7l was solved by Y.Zhao, L.Sun, H.T.Yang, Z.H.Rao, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.49 / 2.11
Space group	P 65 2 2
Cell size a, b, c (Å), α, β, γ (°)	117.56, 117.56, 257.3, 90, 90, 120
R / Rfree (%)	18.3 / 21.8

The binding sites of Zinc atom in the Viral Protease Complex Structure (pdb code 7d7l). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Viral Protease Complex Structure, PDB code: 7d7l:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Viral Protease Complex Structure


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Viral Protease Complex Structure within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn401 b:83.7 occ:1.00 SG A:CYS192 2.2 81.6 1.0 SG A:CYS224 2.2 84.0 1.0 SG A:CYS189 2.2 66.6 1.0 SG A:CYS226 2.2 87.2 1.0 CB A:CYS189 3.2 51.2 1.0 CB A:CYS226 3.2 88.5 1.0 CB A:CYS224 3.2 68.7 1.0 CB A:CYS192 3.3 74.1 1.0 N A:CYS192 3.7 64.0 1.0 N A:CYS226 4.1 88.6 1.0 CA A:CYS192 4.1 59.8 1.0 CA A:CYS226 4.2 93.2 1.0 CB A:THR191 4.5 80.0 1.0 CA A:CYS189 4.6 49.6 1.0 CA A:CYS224 4.7 76.3 1.0 C A:THR191 4.7 60.3 1.0 C A:CYS224 4.9 72.1 1.0 N A:THR191 4.9 61.2 1.0 N A:THR225 5.0 72.6 1.0 CA A:THR191 5.0 62.2 1.0

Zinc binding site 2 out of 2 in the Viral Protease Complex Structure


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Viral Protease Complex Structure within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn401 b:49.5 occ:1.00 SG B:CYS189 2.2 42.7 1.0 SG B:CYS224 2.2 50.2 1.0 SG B:CYS226 2.3 53.5 1.0 SG B:CYS192 2.3 58.0 1.0 CB B:CYS224 3.1 45.5 1.0 CB B:CYS189 3.2 43.3 1.0 CB B:CYS192 3.3 53.2 1.0 CB B:CYS226 3.3 52.4 1.0 N B:CYS192 4.0 52.6 1.0 N B:CYS226 4.0 45.6 1.0 CA B:CYS226 4.2 61.6 1.0 CA B:CYS192 4.3 52.6 1.0 CA B:CYS224 4.6 41.9 1.0 CA B:CYS189 4.7 45.7 1.0 CD B:LYS228 4.8 63.7 1.0 N B:THR225 4.9 51.7 1.0 CB B:LYS228 4.9 41.2 1.0 C B:CYS226 5.0 53.0 1.0 C B:CYS224 5.0 52.9 1.0

Y.Zhao, L.Sun, H.T.Yang, Z.H.Rao. Viral Protease Complex Structure To Be Published.