Zinc in PDB 7d7d: Cryoem Structure of GP45-Dependent Transcription Activation Complex

All present enzymatic activity of Cryoem Structure of GP45-Dependent Transcription Activation Complex:
2.7.7.6;

The structure of Cryoem Structure of GP45-Dependent Transcription Activation Complex also contains other interesting chemical elements:

Magnesium

(Mg)

1 atom

The binding sites of Zinc atom in the Cryoem Structure of GP45-Dependent Transcription Activation Complex (pdb code 7d7d). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Cryoem Structure of GP45-Dependent Transcription Activation Complex, PDB code: 7d7d:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Cryoem Structure of GP45-Dependent Transcription Activation Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryoem Structure of GP45-Dependent Transcription Activation Complex within 5.0Å range: probe atom residue distance (Å) B Occ D:Zn1502 b:236.5 occ:1.00 SG D:CYS88 2.3 202.4 1.0 CB D:CYS72 2.4 209.6 1.0 CG D:LYS87 2.4 208.3 1.0 CA D:CYS72 2.4 209.6 1.0 N D:CYS72 2.5 209.6 1.0 N D:CYS88 2.6 202.4 1.0 CB D:LYS87 2.8 208.3 1.0 C D:LEU71 3.1 209.1 1.0 SG D:CYS85 3.1 207.2 1.0 C D:LYS87 3.3 208.3 1.0 O D:LEU71 3.4 209.1 1.0 CB D:CYS88 3.4 202.4 1.0 CA D:CYS88 3.4 202.4 1.0 CD1 D:LEU71 3.4 209.1 1.0 CA D:LYS87 3.6 208.3 1.0 SG D:CYS72 3.7 209.6 1.0 CD D:LYS87 3.8 208.3 1.0 C D:CYS72 4.0 209.6 1.0 CG D:LEU71 4.1 209.1 1.0 N D:LYS87 4.2 208.3 1.0 CA D:LEU71 4.2 209.1 1.0 O D:LYS87 4.2 208.3 1.0 CE D:LYS87 4.4 208.3 1.0 CB D:CYS85 4.5 207.2 1.0 N D:LEU71 4.5 209.1 1.0 CB D:LEU71 4.6 209.1 1.0 O D:CYS72 4.7 209.6 1.0 N D:GLY73 4.8 198.8 1.0 C D:CYS88 4.8 202.4 1.0

Zinc binding site 2 out of 2 in the Cryoem Structure of GP45-Dependent Transcription Activation Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Cryoem Structure of GP45-Dependent Transcription Activation Complex within 5.0Å range: probe atom residue distance (Å) B Occ D:Zn1503 b:158.5 occ:1.00 SG D:CYS898 2.2 109.3 1.0 NH2 D:ARG883 2.2 116.1 1.0 SG D:CYS814 2.2 122.9 1.0 SG D:CYS888 2.3 119.1 1.0 SG D:CYS895 2.3 112.4 1.0 CB D:CYS814 2.5 122.9 1.0 CB D:CYS888 3.3 119.1 1.0 CB D:CYS898 3.3 109.3 1.0 CB D:CYS895 3.4 112.4 1.0 CA D:CYS888 3.5 119.1 1.0 CZ D:ARG883 3.5 116.1 1.0 N D:CYS814 3.5 122.9 1.0 CA D:CYS814 3.6 122.9 1.0 N D:ASP889 3.6 127.4 1.0 N D:CYS895 4.0 112.4 1.0 C D:CYS888 4.1 119.1 1.0 NE D:ARG883 4.2 116.1 1.0 CA D:CYS895 4.2 112.4 1.0 NH1 D:ARG883 4.4 116.1 1.0 CA D:CYS898 4.4 109.3 1.0 N D:CYS898 4.5 109.3 1.0 CG2 D:THR816 4.5 121.7 1.0 O D:CYS895 4.5 112.4 1.0 OG1 D:THR890 4.6 126.9 1.0 C D:CYS814 4.6 122.9 1.0 N D:CYS888 4.7 119.1 1.0 C D:CYS895 4.7 112.4 1.0 C D:ASP813 4.8 115.0 1.0 CA D:ASP889 4.8 127.4 1.0 CG2 D:VAL894 4.9 110.1 1.0 CB D:ASP889 5.0 127.4 1.0

J.Shi, A.Wen, S.Jin, B.Gao, Y.Huang, Y.Feng. Transcription Activation By A Sliding Clamp. Nat Commun 2021.
ISSN: ESSN 2041-1723