Zinc in PDB 7d5q: Structure of Norc Transporter (K398A Mutant) in An Outward-Open Conformation in Complex with A Single-Chain Indian Camelid Antibody

The structure of Structure of Norc Transporter (K398A Mutant) in An Outward-Open Conformation in Complex with A Single-Chain Indian Camelid Antibody, PDB code: 7d5q was solved by S.Kumar, A.Athreya, A.Penmatsa, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	111.52 / 3.60
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	70.071, 139.148, 115.555, 90, 105.66, 90
R / Rfree (%)	30.8 / 31.5

The binding sites of Zinc atom in the Structure of Norc Transporter (K398A Mutant) in An Outward-Open Conformation in Complex with A Single-Chain Indian Camelid Antibody (pdb code 7d5q). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Structure of Norc Transporter (K398A Mutant) in An Outward-Open Conformation in Complex with A Single-Chain Indian Camelid Antibody, PDB code: 7d5q:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Structure of Norc Transporter (K398A Mutant) in An Outward-Open Conformation in Complex with A Single-Chain Indian Camelid Antibody


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of Norc Transporter (K398A Mutant) in An Outward-Open Conformation in Complex with A Single-Chain Indian Camelid Antibody within 5.0Å range: probe atom residue distance (Å) B Occ C:Zn201 b:122.2 occ:1.00 NE2 C:HIS109 2.1 131.7 1.0 SG C:CYS40 2.1 133.6 1.0 OD2 C:ASP106 2.2 141.4 1.0 ND1 C:HIS116 2.7 135.9 1.0 OD1 C:ASP106 2.7 145.0 1.0 CG C:ASP106 2.8 146.4 1.0 CB C:CYS40 2.8 130.8 1.0 CD2 C:HIS109 2.9 132.2 1.0 CE1 C:HIS109 3.1 129.4 1.0 CG C:HIS116 3.2 137.1 1.0 N C:CYS40 3.2 127.0 1.0 CE1 C:HIS116 3.2 136.3 1.0 CA C:CYS40 3.6 128.0 1.0 CB C:HIS116 3.7 139.3 1.0 NE2 C:HIS116 3.9 138.6 1.0 CD2 C:HIS116 3.9 136.8 1.0 CG C:HIS109 4.1 129.9 1.0 ND1 C:HIS109 4.2 129.3 1.0 C C:TYR39 4.2 125.3 1.0 CB C:ASP106 4.2 147.4 1.0 N C:HIS116 4.5 134.8 1.0 CA C:TYR39 4.5 124.0 1.0 C C:CYS40 4.7 124.0 1.0 CA C:HIS116 4.8 138.1 1.0 O C:CYS40 4.8 120.1 1.0

Zinc binding site 2 out of 2 in the Structure of Norc Transporter (K398A Mutant) in An Outward-Open Conformation in Complex with A Single-Chain Indian Camelid Antibody


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of Norc Transporter (K398A Mutant) in An Outward-Open Conformation in Complex with A Single-Chain Indian Camelid Antibody within 5.0Å range: probe atom residue distance (Å) B Occ D:Zn201 b:126.2 occ:1.00 NE2 D:HIS109 2.0 140.4 1.0 SG D:CYS40 2.2 137.0 1.0 OD2 D:ASP106 2.2 126.2 1.0 ND1 D:HIS116 2.5 145.8 1.0 CG D:ASP106 2.9 131.0 1.0 CD2 D:HIS109 2.9 141.2 1.0 OD1 D:ASP106 2.9 130.8 1.0 CB D:CYS40 3.0 138.2 1.0 CE1 D:HIS116 3.0 146.6 1.0 CE1 D:HIS109 3.1 141.4 1.0 CG D:HIS116 3.1 146.9 1.0 N D:CYS40 3.4 136.8 1.0 CB D:HIS116 3.6 145.8 1.0 NE2 D:HIS116 3.7 148.8 1.0 CD2 D:HIS116 3.8 147.8 1.0 CA D:CYS40 3.8 135.1 1.0 CG D:HIS109 4.0 140.1 1.0 ND1 D:HIS109 4.1 140.6 1.0 CB D:ASP106 4.3 135.2 1.0 C D:TYR39 4.4 134.4 1.0 N D:HIS116 4.4 143.8 1.0 CA D:TYR39 4.6 134.8 1.0 CA D:HIS116 4.7 143.6 1.0 C D:CYS40 4.9 127.6 1.0 O D:SER114 4.9 171.0 1.0 O D:CYS40 5.0 125.7 1.0

S.Kumar, A.Athreya, A.Penmatsa. Structure of Norc Transporter (K398A Mutant) in An Outward-Open Conformation in Complex with A Single-Chain Indian Camelid Antibody To Be Published.