Zinc in PDB 7d3v: Non-Specific and Specific Interactions Work Cooperatively to Promote Cytidine Deamination Catalyzed By APOBEC3A

All present enzymatic activity of Non-Specific and Specific Interactions Work Cooperatively to Promote Cytidine Deamination Catalyzed By APOBEC3A:
3.5.4.38;

The binding sites of Zinc atom in the Non-Specific and Specific Interactions Work Cooperatively to Promote Cytidine Deamination Catalyzed By APOBEC3A (pdb code 7d3v). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Non-Specific and Specific Interactions Work Cooperatively to Promote Cytidine Deamination Catalyzed By APOBEC3A, PDB code: 7d3v:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Non-Specific and Specific Interactions Work Cooperatively to Promote Cytidine Deamination Catalyzed By APOBEC3A


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Non-Specific and Specific Interactions Work Cooperatively to Promote Cytidine Deamination Catalyzed By APOBEC3A within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn201 b:0.0 occ:1.00 ND1 A:HIS70 2.0 0.0 1.0 SG A:CYS101 2.3 0.0 1.0 SG A:CYS106 2.3 0.0 1.0 HB2 A:HIS70 2.7 0.0 1.0 CG A:HIS70 2.7 0.0 1.0 CE1 A:HIS70 3.0 0.0 1.0 CB A:HIS70 3.0 0.0 1.0 CB A:CYS101 3.1 0.0 1.0 HB2 A:CYS101 3.2 0.0 1.0 HB3 A:HIS70 3.2 0.0 1.0 HB3 A:CYS101 3.2 0.0 1.0 CB A:CYS106 3.3 0.0 1.0 HE1 A:HIS70 3.4 0.0 1.0 HB3 A:CYS106 3.4 0.0 1.0 OE1 A:GLN72 3.4 0.0 1.0 HB2 A:CYS106 3.4 0.0 1.0 CD2 A:HIS70 3.8 0.0 1.0 HB2 A:GLN72 3.8 0.0 1.0 NE2 A:HIS70 3.9 0.0 1.0 HB2 A:SER103 4.1 0.0 1.0 N3 D:DC414 4.3 0.0 1.0 H41 D:DC414 4.3 0.0 1.0 CA A:HIS70 4.5 0.0 1.0 CA A:CYS101 4.5 0.0 1.0 CD A:GLN72 4.5 0.0 1.0 CA A:CYS106 4.7 0.0 1.0 HD2 A:HIS70 4.7 0.0 1.0 HE2 A:HIS70 4.8 0.0 1.0 CB A:GLN72 4.8 0.0 1.0 HA A:CYS106 4.9 0.0 1.0 N4 D:DC414 4.9 0.0 1.0 C A:CYS101 4.9 0.0 1.0 C4 D:DC414 4.9 0.0 1.0 N A:HIS70 4.9 0.0 1.0 C2 D:DC414 5.0 0.0 1.0

Zinc binding site 2 out of 2 in the Non-Specific and Specific Interactions Work Cooperatively to Promote Cytidine Deamination Catalyzed By APOBEC3A


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Non-Specific and Specific Interactions Work Cooperatively to Promote Cytidine Deamination Catalyzed By APOBEC3A within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn401 b:0.0 occ:1.00 ND1 B:HIS269 2.0 0.0 1.0 SG B:CYS305 2.3 0.0 1.0 SG B:CYS300 2.3 0.0 1.0 CE1 B:HIS269 3.0 0.0 1.0 CG B:HIS269 3.0 0.0 1.0 HB3 B:HIS269 3.0 0.0 1.0 HE1 B:HIS269 3.2 0.0 1.0 HB2 B:CYS300 3.2 0.0 1.0 CB B:HIS269 3.4 0.0 1.0 CB B:CYS305 3.4 0.0 1.0 OE1 B:GLN271 3.4 0.0 1.0 CB B:CYS300 3.4 0.0 1.0 HB2 B:CYS305 3.4 0.0 1.0 HB2 B:HIS269 3.5 0.0 1.0 O B:PHE301 3.6 0.0 1.0 HB3 B:CYS305 3.6 0.0 1.0 HB2 B:GLN271 3.8 0.0 1.0 CD B:GLN271 3.9 0.0 1.0 HB3 B:CYS300 4.1 0.0 1.0 CD2 B:HIS269 4.1 0.0 1.0 NE2 B:HIS269 4.1 0.0 1.0 HE22 B:GLN271 4.2 0.0 1.0 NE2 B:GLN271 4.3 0.0 1.0 H B:CYS305 4.3 0.0 1.0 CA B:CYS300 4.5 0.0 1.0 H B:PHE301 4.5 0.0 1.0 C B:CYS300 4.5 0.0 1.0 HG3 B:GLN271 4.6 0.0 1.0 N B:PHE301 4.6 0.0 1.0 HD1 B:TRP303 4.6 0.0 1.0 C B:PHE301 4.6 0.0 1.0 CG B:GLN271 4.6 0.0 1.0 CB B:GLN271 4.7 0.0 1.0 H B:ALA306 4.7 0.0 1.0 HA B:CYS300 4.8 0.0 1.0 CA B:CYS305 4.8 0.0 1.0 H B:TRP303 4.8 0.0 1.0 CA B:HIS269 4.8 0.0 1.0 HA B:SER302 4.9 0.0 1.0 HE21 B:GLN271 4.9 0.0 1.0 H B:GLN271 4.9 0.0 1.0 N B:CYS305 5.0 0.0 1.0

Y.P.Liu, W.X.Lan, C.X.Wang, C.Y.Cao. Non-Specific and Specific Interactions Work Cooperatively to Promote Cytidine Deamination Catalyzed By APOBEC3 To Be Published.