Zinc in PDB 7crr: Native NSD3 Bound to 187-Bp Nucleosome

Zinc Binding Sites:

The binding sites of Zinc atom in the Native NSD3 Bound to 187-Bp Nucleosome (pdb code 7crr). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the Native NSD3 Bound to 187-Bp Nucleosome, PDB code: 7crr:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in 7crr

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Zinc binding site 1 out of 3 in the Native NSD3 Bound to 187-Bp Nucleosome


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Native NSD3 Bound to 187-Bp Nucleosome within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Zn1502

b:0.8
occ:1.00
SG I:CYS1275 2.4 0.4 1.0
SG I:CYS1226 2.5 0.1 1.0
CB I:CYS1280 2.6 0.2 1.0
O I:CYS1280 2.8 0.2 1.0
N I:CYS1226 3.3 0.1 1.0
CA I:CYS1280 3.3 0.2 1.0
CB I:CYS1226 3.3 0.1 1.0
SG I:CYS1280 3.4 0.2 1.0
CB I:CYS1273 3.5 0.6 1.0
C I:CYS1280 3.5 0.2 1.0
CB I:CYS1275 3.9 0.4 1.0
CA I:CYS1226 3.9 0.1 1.0
C I:SER1225 4.1 0.9 1.0
O I:CYS1273 4.2 0.6 1.0
SG I:CYS1273 4.3 0.6 1.0
CA I:SER1225 4.3 0.9 1.0
CA I:CYS1273 4.7 0.6 1.0
N I:CYS1280 4.7 0.2 1.0
C I:CYS1273 4.7 0.6 1.0
N I:SER1281 4.8 0.3 1.0
N I:CYS1275 4.8 0.4 1.0
N I:GLY1276 4.8 0.1 1.0
CA I:CYS1275 4.9 0.4 1.0

Zinc binding site 2 out of 3 in 7crr

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Zinc binding site 2 out of 3 in the Native NSD3 Bound to 187-Bp Nucleosome


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Native NSD3 Bound to 187-Bp Nucleosome within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Zn1503

b:0.1
occ:1.00
SG I:CYS1108 2.3 94.3 1.0
SG I:CYS1114 2.3 82.1 1.0
SG I:CYS1100 2.4 96.6 1.0
SG I:CYS1098 2.4 91.6 1.0
CB I:CYS1114 2.8 82.1 1.0
CB I:CYS1108 3.2 94.3 1.0
CB I:CYS1100 3.4 96.6 1.0
CA I:CYS1114 3.4 82.1 1.0
CA I:CYS1108 3.4 94.3 1.0
CB I:CYS1098 3.5 91.6 1.0
N I:CYS1108 4.0 94.3 1.0
C I:CYS1114 4.2 82.1 1.0
N I:CYS1100 4.3 96.6 1.0
N I:LEU1115 4.3 70.5 1.0
CA I:CYS1100 4.4 96.6 1.0
N I:CYS1114 4.5 82.1 1.0
ZN I:ZN1504 4.6 0.3 1.0
C I:CYS1108 4.8 94.3 1.0
N I:ASN1099 4.9 86.1 1.0
CA I:CYS1098 4.9 91.6 1.0

Zinc binding site 3 out of 3 in 7crr

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Zinc binding site 3 out of 3 in the Native NSD3 Bound to 187-Bp Nucleosome


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Native NSD3 Bound to 187-Bp Nucleosome within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Zn1504

b:0.3
occ:1.00
SG I:CYS1123 2.4 83.9 1.0
SG I:CYS1108 2.6 94.3 1.0
SG I:CYS1134 2.6 0.5 1.0
CB I:CYS1134 2.6 0.5 1.0
SG I:CYS1128 2.9 98.2 1.0
CB I:CYS1108 3.2 94.3 1.0
CB I:CYS1123 3.4 83.9 1.0
CB I:CYS1128 3.7 98.2 1.0
CA I:CYS1134 4.1 0.5 1.0
CB I:ASN1136 4.4 92.2 1.0
CB I:ALA1130 4.6 0.2 1.0
ZN I:ZN1503 4.6 0.1 1.0
CA I:CYS1108 4.7 94.3 1.0
C I:CYS1134 4.7 0.5 1.0
CA I:CYS1123 4.8 83.9 1.0
O I:PRO1107 4.8 0.8 1.0

Reference:

W.Li, W.Tian, G.Yuan, P.Deng, O.Gozani, D.Patel, Z.Wang. Molecular Basis of Nucleosomal H3K36 Methylation By Nsd Methyltransferases To Be Published.
Page generated: Wed Dec 16 13:42:28 2020

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