Zinc in PDB 7coi: Crystal Structure of the B-Carbonic Anhydrase Cafa of the Fungal Pathogen Aspergillus Fumigatus
Enzymatic activity of Crystal Structure of the B-Carbonic Anhydrase Cafa of the Fungal Pathogen Aspergillus Fumigatus
All present enzymatic activity of Crystal Structure of the B-Carbonic Anhydrase Cafa of the Fungal Pathogen Aspergillus Fumigatus:
4.2.1.1;
Protein crystallography data
The structure of Crystal Structure of the B-Carbonic Anhydrase Cafa of the Fungal Pathogen Aspergillus Fumigatus, PDB code: 7coi
was solved by
M.S.Jin,
S.Kim,
J.Yeon,
J.Sung,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
29.88 /
1.80
|
Space group
|
P 2 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
66.656,
88.713,
144.215,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
17.3 /
20.4
|
Zinc Binding Sites:
The binding sites of Zinc atom in the Crystal Structure of the B-Carbonic Anhydrase Cafa of the Fungal Pathogen Aspergillus Fumigatus
(pdb code 7coi). This binding sites where shown within
5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the
Crystal Structure of the B-Carbonic Anhydrase Cafa of the Fungal Pathogen Aspergillus Fumigatus, PDB code: 7coi:
Jump to Zinc binding site number:
1;
2;
3;
4;
Zinc binding site 1 out
of 4 in 7coi
Go back to
Zinc Binding Sites List in 7coi
Zinc binding site 1 out
of 4 in the Crystal Structure of the B-Carbonic Anhydrase Cafa of the Fungal Pathogen Aspergillus Fumigatus
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 1 of Crystal Structure of the B-Carbonic Anhydrase Cafa of the Fungal Pathogen Aspergillus Fumigatus within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn302
b:17.6
occ:1.00
|
OXT
|
A:ACT301
|
2.0
|
18.9
|
1.0
|
NE2
|
A:HIS175
|
2.1
|
15.7
|
1.0
|
SG
|
A:CYS178
|
2.3
|
17.2
|
1.0
|
SG
|
A:CYS119
|
2.3
|
13.7
|
1.0
|
C
|
A:ACT301
|
3.0
|
25.7
|
1.0
|
CE1
|
A:HIS175
|
3.1
|
17.7
|
1.0
|
CD2
|
A:HIS175
|
3.1
|
16.2
|
1.0
|
CB
|
A:CYS119
|
3.2
|
13.6
|
1.0
|
CB
|
A:CYS178
|
3.3
|
17.7
|
1.0
|
CH3
|
A:ACT301
|
3.5
|
29.8
|
1.0
|
CA
|
A:CYS178
|
3.6
|
19.3
|
1.0
|
CB
|
A:ASP121
|
3.9
|
15.9
|
1.0
|
O
|
A:ACT301
|
4.0
|
26.2
|
1.0
|
ND1
|
A:HIS175
|
4.2
|
17.2
|
1.0
|
N
|
A:GLY179
|
4.2
|
22.8
|
1.0
|
OD2
|
A:ASP121
|
4.2
|
16.8
|
1.0
|
CG
|
A:HIS175
|
4.2
|
17.5
|
1.0
|
C
|
A:CYS178
|
4.2
|
19.5
|
1.0
|
CA
|
A:ALA144
|
4.2
|
13.6
|
1.0
|
N
|
A:ALA144
|
4.3
|
12.6
|
1.0
|
O
|
A:HOH458
|
4.4
|
15.9
|
1.0
|
O
|
A:HOH481
|
4.5
|
31.5
|
1.0
|
CG
|
A:ASP121
|
4.6
|
15.5
|
1.0
|
CA
|
A:CYS119
|
4.6
|
12.7
|
1.0
|
N
|
A:GLY180
|
4.7
|
19.5
|
1.0
|
N
|
A:ASP121
|
4.8
|
14.1
|
1.0
|
N
|
A:CYS178
|
4.8
|
19.1
|
1.0
|
CA
|
A:ASP121
|
4.9
|
13.8
|
1.0
|
CB
|
A:ALA144
|
4.9
|
13.8
|
1.0
|
|
Zinc binding site 2 out
of 4 in 7coi
Go back to
Zinc Binding Sites List in 7coi
Zinc binding site 2 out
of 4 in the Crystal Structure of the B-Carbonic Anhydrase Cafa of the Fungal Pathogen Aspergillus Fumigatus
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 2 of Crystal Structure of the B-Carbonic Anhydrase Cafa of the Fungal Pathogen Aspergillus Fumigatus within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Zn302
b:15.4
occ:1.00
|
OXT
|
B:ACT301
|
2.1
|
18.3
|
1.0
|
NE2
|
B:HIS175
|
2.1
|
14.6
|
1.0
|
SG
|
B:CYS119
|
2.3
|
14.3
|
1.0
|
SG
|
B:CYS178
|
2.4
|
14.6
|
1.0
|
CE1
|
B:HIS175
|
3.0
|
15.4
|
1.0
|
C
|
B:ACT301
|
3.0
|
25.3
|
1.0
|
CD2
|
B:HIS175
|
3.1
|
14.5
|
1.0
|
CB
|
B:CYS119
|
3.2
|
13.0
|
1.0
|
CB
|
B:CYS178
|
3.3
|
14.9
|
1.0
|
CH3
|
B:ACT301
|
3.5
|
27.1
|
1.0
|
CA
|
B:CYS178
|
3.6
|
15.5
|
1.0
|
CB
|
B:ASP121
|
3.8
|
12.7
|
1.0
|
O
|
B:ACT301
|
4.0
|
30.8
|
1.0
|
N
|
B:GLY179
|
4.1
|
16.1
|
1.0
|
ND1
|
B:HIS175
|
4.2
|
14.5
|
1.0
|
OD2
|
B:ASP121
|
4.2
|
14.6
|
1.0
|
CG
|
B:HIS175
|
4.2
|
14.0
|
1.0
|
C
|
B:CYS178
|
4.2
|
15.8
|
1.0
|
CA
|
B:ALA144
|
4.2
|
11.5
|
1.0
|
N
|
B:ALA144
|
4.3
|
11.0
|
1.0
|
O
|
B:HOH441
|
4.4
|
12.7
|
1.0
|
CG
|
B:ASP121
|
4.5
|
15.1
|
1.0
|
CA
|
B:CYS119
|
4.6
|
12.1
|
1.0
|
N
|
B:GLY180
|
4.7
|
15.8
|
1.0
|
N
|
B:ASP121
|
4.8
|
13.2
|
1.0
|
O
|
B:HOH465
|
4.8
|
34.7
|
1.0
|
N
|
B:CYS178
|
4.8
|
14.6
|
1.0
|
CA
|
B:ASP121
|
4.9
|
12.3
|
1.0
|
CB
|
B:ALA144
|
5.0
|
12.7
|
1.0
|
|
Zinc binding site 3 out
of 4 in 7coi
Go back to
Zinc Binding Sites List in 7coi
Zinc binding site 3 out
of 4 in the Crystal Structure of the B-Carbonic Anhydrase Cafa of the Fungal Pathogen Aspergillus Fumigatus
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 3 of Crystal Structure of the B-Carbonic Anhydrase Cafa of the Fungal Pathogen Aspergillus Fumigatus within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Zn302
b:23.3
occ:1.00
|
OXT
|
C:ACT301
|
2.0
|
27.1
|
1.0
|
NE2
|
C:HIS175
|
2.1
|
23.0
|
1.0
|
SG
|
C:CYS178
|
2.3
|
22.9
|
1.0
|
SG
|
C:CYS119
|
2.4
|
20.2
|
1.0
|
C
|
C:ACT301
|
3.0
|
37.1
|
1.0
|
CE1
|
C:HIS175
|
3.0
|
24.7
|
1.0
|
CD2
|
C:HIS175
|
3.1
|
22.9
|
1.0
|
CB
|
C:CYS119
|
3.3
|
17.5
|
1.0
|
CB
|
C:CYS178
|
3.3
|
24.4
|
1.0
|
CH3
|
C:ACT301
|
3.3
|
37.5
|
1.0
|
CA
|
C:CYS178
|
3.6
|
26.8
|
1.0
|
CB
|
C:ASP121
|
3.9
|
20.4
|
1.0
|
O
|
C:ACT301
|
3.9
|
38.6
|
1.0
|
ND1
|
C:HIS175
|
4.2
|
26.2
|
1.0
|
N
|
C:GLY179
|
4.2
|
29.1
|
1.0
|
OD2
|
C:ASP121
|
4.2
|
25.4
|
1.0
|
CG
|
C:HIS175
|
4.2
|
24.5
|
1.0
|
CA
|
C:ALA144
|
4.2
|
18.9
|
1.0
|
C
|
C:CYS178
|
4.3
|
27.9
|
1.0
|
N
|
C:ALA144
|
4.3
|
18.8
|
1.0
|
O
|
C:HOH468
|
4.4
|
19.3
|
1.0
|
CG
|
C:ASP121
|
4.5
|
23.2
|
1.0
|
CA
|
C:CYS119
|
4.7
|
17.5
|
1.0
|
N
|
C:GLY180
|
4.7
|
23.9
|
1.0
|
N
|
C:ASP121
|
4.8
|
16.9
|
1.0
|
N
|
C:CYS178
|
4.8
|
27.4
|
1.0
|
CA
|
C:ASP121
|
4.9
|
17.4
|
1.0
|
CB
|
C:ALA144
|
4.9
|
20.2
|
1.0
|
|
Zinc binding site 4 out
of 4 in 7coi
Go back to
Zinc Binding Sites List in 7coi
Zinc binding site 4 out
of 4 in the Crystal Structure of the B-Carbonic Anhydrase Cafa of the Fungal Pathogen Aspergillus Fumigatus
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 4 of Crystal Structure of the B-Carbonic Anhydrase Cafa of the Fungal Pathogen Aspergillus Fumigatus within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Zn302
b:18.1
occ:1.00
|
O
|
D:ACT301
|
2.1
|
23.3
|
1.0
|
NE2
|
D:HIS175
|
2.1
|
16.6
|
1.0
|
SG
|
D:CYS119
|
2.3
|
16.6
|
1.0
|
SG
|
D:CYS178
|
2.3
|
18.5
|
1.0
|
C
|
D:ACT301
|
3.0
|
28.6
|
1.0
|
CE1
|
D:HIS175
|
3.0
|
18.3
|
1.0
|
CD2
|
D:HIS175
|
3.1
|
16.8
|
1.0
|
CB
|
D:CYS119
|
3.2
|
17.2
|
1.0
|
CB
|
D:CYS178
|
3.3
|
19.5
|
1.0
|
CH3
|
D:ACT301
|
3.3
|
30.7
|
1.0
|
CA
|
D:CYS178
|
3.6
|
20.4
|
1.0
|
CB
|
D:ASP121
|
3.8
|
17.1
|
1.0
|
OXT
|
D:ACT301
|
4.0
|
33.9
|
1.0
|
N
|
D:GLY179
|
4.1
|
20.4
|
1.0
|
ND1
|
D:HIS175
|
4.1
|
18.9
|
1.0
|
OD2
|
D:ASP121
|
4.2
|
17.3
|
1.0
|
CG
|
D:HIS175
|
4.2
|
16.2
|
1.0
|
C
|
D:CYS178
|
4.3
|
18.4
|
1.0
|
CA
|
D:ALA144
|
4.3
|
13.6
|
1.0
|
N
|
D:ALA144
|
4.4
|
13.4
|
1.0
|
O
|
D:HOH450
|
4.4
|
15.8
|
1.0
|
CG
|
D:ASP121
|
4.5
|
16.7
|
1.0
|
CA
|
D:CYS119
|
4.6
|
14.5
|
1.0
|
N
|
D:GLY180
|
4.7
|
19.2
|
1.0
|
N
|
D:ASP121
|
4.7
|
16.0
|
1.0
|
CA
|
D:ASP121
|
4.8
|
15.8
|
1.0
|
N
|
D:CYS178
|
4.9
|
20.7
|
1.0
|
CB
|
D:ALA144
|
5.0
|
14.1
|
1.0
|
|
Reference:
S.Kim,
J.Yeon,
J.Sung,
M.S.Jin.
Crystal Structure of Beta-Carbonic Anhydrase Cafa From the Fungal Pathogen Aspergillus Fumigatus . Mol.Cells V. 43 831 2020.
ISSN: ISSN 1016-8478
PubMed: 32975213
DOI: 10.14348/MOLCELLS.2020.0168
Page generated: Tue Oct 29 18:20:17 2024
|