Zinc in PDB 7c8j: Structural Basis For Cross-Species Recognition of Covid-19 Virus Spike Receptor Binding Domain to Bat ACE2

The structure of Structural Basis For Cross-Species Recognition of Covid-19 Virus Spike Receptor Binding Domain to Bat ACE2, PDB code: 7c8j was solved by K.F.Liu, J.Wang, S.G.Tan, S.Niu, L.L.Wu, Y.F.Zhang, X.Q.Pan, Y.M.Meng, Q.Chen, Q.H.Wang, H.W.Wang, J.X.Qi, G.F.Gao, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.10 / 3.18
Space group	I 4 2 2
Cell size a, b, c (Å), α, β, γ (°)	163.197, 163.197, 211.671, 90, 90, 90
R / Rfree (%)	21.9 / 27.1

The binding sites of Zinc atom in the Structural Basis For Cross-Species Recognition of Covid-19 Virus Spike Receptor Binding Domain to Bat ACE2 (pdb code 7c8j). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Structural Basis For Cross-Species Recognition of Covid-19 Virus Spike Receptor Binding Domain to Bat ACE2, PDB code: 7c8j:

Zinc binding site 1 out of 1 in the Structural Basis For Cross-Species Recognition of Covid-19 Virus Spike Receptor Binding Domain to Bat ACE2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structural Basis For Cross-Species Recognition of Covid-19 Virus Spike Receptor Binding Domain to Bat ACE2 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn801 b:43.0 occ:1.00 OE2 A:GLU402 2.0 34.8 1.0 NE2 A:HIS378 2.1 42.4 1.0 NE2 A:HIS374 2.1 37.3 1.0 CD A:GLU402 2.6 45.6 1.0 OE1 A:GLU402 2.7 48.0 1.0 CD2 A:HIS378 2.7 45.5 1.0 CD2 A:HIS374 2.9 52.2 1.0 CE1 A:HIS374 3.2 50.8 1.0 CE1 A:HIS378 3.3 46.3 1.0 CG A:HIS378 3.9 34.9 1.0 CG A:GLU402 4.0 47.1 1.0 OE1 A:GLU375 4.0 41.6 1.0 CG A:HIS374 4.1 43.7 1.0 OE2 A:GLU375 4.1 42.0 1.0 ND1 A:HIS378 4.2 35.2 1.0 ND1 A:HIS374 4.2 48.4 1.0 CD A:GLU375 4.5 37.8 1.0 CA A:GLU402 4.9 45.0 1.0 CB A:GLU402 5.0 48.0 1.0

K.Liu, S.Tan, S.Niu, J.Wang, L.Wu, H.Sun, Y.Zhang, X.Pan, X.Qu, P.Du, Y.Meng, Y.Jia, Q.Chen, C.Deng, J.Yan, H.W.Wang, Q.Wang, J.Qi, G.F.Gao. Cross-Species Recognition of Sars-Cov-2 to Bat ACE2. Proc.Natl.Acad.Sci.Usa V. 118 2021.
ISSN: ESSN 1091-6490
PubMed: 33335073
DOI: 10.1073/PNAS.2020216118