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Zinc in PDB 7bvb: Crystal Structure of Udp-N-Acetylmuramic Acid L-Alanine Ligase (Murc) From Mycobacterium Bovis in Complex with Udp-N-Acetylglucosamine

Enzymatic activity of Crystal Structure of Udp-N-Acetylmuramic Acid L-Alanine Ligase (Murc) From Mycobacterium Bovis in Complex with Udp-N-Acetylglucosamine

All present enzymatic activity of Crystal Structure of Udp-N-Acetylmuramic Acid L-Alanine Ligase (Murc) From Mycobacterium Bovis in Complex with Udp-N-Acetylglucosamine:
6.3.2.8;

Protein crystallography data

The structure of Crystal Structure of Udp-N-Acetylmuramic Acid L-Alanine Ligase (Murc) From Mycobacterium Bovis in Complex with Udp-N-Acetylglucosamine, PDB code: 7bvb was solved by P.W.Seo, J.S.Kim, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.25 / 3.19
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 65.285, 75.762, 104.679, 90.00, 105.92, 90.00
R / Rfree (%) 19.5 / 24.7

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Udp-N-Acetylmuramic Acid L-Alanine Ligase (Murc) From Mycobacterium Bovis in Complex with Udp-N-Acetylglucosamine (pdb code 7bvb). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of Udp-N-Acetylmuramic Acid L-Alanine Ligase (Murc) From Mycobacterium Bovis in Complex with Udp-N-Acetylglucosamine, PDB code: 7bvb:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 7bvb

Go back to Zinc Binding Sites List in 7bvb
Zinc binding site 1 out of 2 in the Crystal Structure of Udp-N-Acetylmuramic Acid L-Alanine Ligase (Murc) From Mycobacterium Bovis in Complex with Udp-N-Acetylglucosamine


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Udp-N-Acetylmuramic Acid L-Alanine Ligase (Murc) From Mycobacterium Bovis in Complex with Udp-N-Acetylglucosamine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn501

b:67.0
occ:1.00
 NE2 A:HIS354 2.0 62.0 1.0
CE1 A:HIS195 2.1 77.1 1.0
NE2 A:HIS195 2.1 72.4 1.0
NE2 A:HIS355 2.2 62.4 1.0
CE1 A:HIS355 2.7 62.5 1.0
CE1 A:HIS354 2.8 57.6 1.0
CD2 A:HIS354 3.1 58.1 1.0
ND1 A:HIS195 3.4 83.6 1.0
CD2 A:HIS355 3.4 60.3 1.0
CD2 A:HIS195 3.5 72.1 1.0
ND1 A:HIS355 3.9 62.3 1.0
ND1 A:HIS354 4.0 54.6 1.0
CG A:HIS195 4.1 81.7 1.0
CG A:HIS354 4.2 55.9 1.0
CG A:HIS355 4.3 60.4 1.0
O A:THR123 4.3 56.2 1.0

Zinc binding site 2 out of 2 in 7bvb

Go back to Zinc Binding Sites List in 7bvb
Zinc binding site 2 out of 2 in the Crystal Structure of Udp-N-Acetylmuramic Acid L-Alanine Ligase (Murc) From Mycobacterium Bovis in Complex with Udp-N-Acetylglucosamine


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Udp-N-Acetylmuramic Acid L-Alanine Ligase (Murc) From Mycobacterium Bovis in Complex with Udp-N-Acetylglucosamine within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn501

b:52.9
occ:1.00
 NE2 B:HIS354 2.1 51.6 1.0
NE2 B:HIS355 2.3 50.3 1.0
O B:HOH631 2.4 42.0 1.0
CE1 B:HIS354 2.7 49.9 1.0
CE1 B:HIS355 3.0 49.3 1.0
O B:HOH625 3.2 47.6 1.0
CD2 B:HIS354 3.4 48.9 1.0
CD2 B:HIS355 3.4 48.5 1.0
O B:THR123 3.8 51.7 1.0
ND1 B:HIS354 3.9 46.1 1.0
NH1 B:ARG389 4.1 62.2 1.0
ND1 B:HIS355 4.1 48.2 1.0
CG B:HIS354 4.3 45.0 1.0
CG B:HIS355 4.4 46.5 1.0
O B:HOH606 4.7 43.4 1.0
CZ B:ARG389 4.8 65.1 1.0
C B:THR123 5.0 50.6 1.0

Reference:

P.W.Seo, J.S.Kim. Crystal Structure of Udp-N-Acetylmuramic Acid L-Alanine Ligase (Murc) From Mycobacterium Bovis in Complex with Udp-N-Acetylglucosamine To Be Published.
Page generated: Tue Oct 29 17:49:50 2024

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