Zinc in PDB 7auf: Anammox-Specific Acyl Carrier Protein From Kuenenia Stuttgartiensis; Normal Refinement

The structure of Anammox-Specific Acyl Carrier Protein From Kuenenia Stuttgartiensis; Normal Refinement, PDB code: 7auf was solved by A.Dietl, T.Barends, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	38.40 / 1.76
Space group	P 64
Cell size a, b, c (Å), α, β, γ (°)	76.81, 76.81, 30.9, 90, 90, 120
R / Rfree (%)	23 / 28.6

The binding sites of Zinc atom in the Anammox-Specific Acyl Carrier Protein From Kuenenia Stuttgartiensis; Normal Refinement (pdb code 7auf). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 7 binding sites of Zinc where determined in the Anammox-Specific Acyl Carrier Protein From Kuenenia Stuttgartiensis; Normal Refinement, PDB code: 7auf:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7;

Zinc binding site 1 out of 7 in the Anammox-Specific Acyl Carrier Protein From Kuenenia Stuttgartiensis; Normal Refinement


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Anammox-Specific Acyl Carrier Protein From Kuenenia Stuttgartiensis; Normal Refinement within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn101 b:47.7 occ:1.00 OD2 A:ASP40 1.3 94.1 1.0 O A:HOH229 2.3 42.5 1.0 CG A:ASP40 2.4 84.5 1.0 O A:HOH208 2.5 44.8 1.0 HB2 A:ASP40 2.9 85.2 1.0 CB A:ASP40 3.0 70.6 1.0 HB3 A:ASP40 3.0 85.2 1.0 OD1 A:ASP40 3.4 100.0 1.0 HD12 A:LEU42 3.6 51.4 1.0 O A:HOH221 3.7 53.3 1.0 HB2 A:LEU42 3.9 46.4 1.0 O A:HOH236 4.2 49.7 1.0 CA A:ASP40 4.5 66.1 1.0 HG A:LEU43 4.6 57.3 1.0 H A:LEU42 4.6 59.6 1.0 CD1 A:LEU42 4.6 42.4 1.0 HA A:ASP40 4.8 79.8 1.0 HG A:LEU42 4.8 50.8 1.0 CB A:LEU42 4.8 38.2 1.0 HD12 A:LEU43 4.9 55.7 1.0

Zinc binding site 2 out of 7 in the Anammox-Specific Acyl Carrier Protein From Kuenenia Stuttgartiensis; Normal Refinement


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Anammox-Specific Acyl Carrier Protein From Kuenenia Stuttgartiensis; Normal Refinement within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn102 b:72.5 occ:1.00 O A:HOH225 2.1 51.3 1.0 OE2 A:GLU7 2.2 81.5 1.0 O A:HOH202 2.3 40.8 1.0 OE1 A:GLU7 2.7 64.8 1.0 CD A:GLU7 2.8 59.1 1.0 O A:HOH234 3.6 49.0 1.0 CG A:GLU7 4.2 48.1 1.0 HH2 A:TRP26 4.3 73.8 1.0 HB3 A:ASP3 4.4 67.3 1.0 HG3 A:GLU7 4.4 58.3 1.0 HZ1 A:LYS78 4.6 65.8 1.0 HG2 A:GLU7 4.7 58.3 1.0 HZ2 A:TRP26 4.7 63.9 1.0 HA A:GLU4 4.9 44.0 1.0 HB2 A:GLU7 5.0 42.1 1.0

Zinc binding site 3 out of 7 in the Anammox-Specific Acyl Carrier Protein From Kuenenia Stuttgartiensis; Normal Refinement


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Anammox-Specific Acyl Carrier Protein From Kuenenia Stuttgartiensis; Normal Refinement within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn103 b:55.8 occ:1.00 O A:HOH207 2.0 53.2 1.0 OE2 A:GLU19 2.1 56.0 1.0 CD A:GLU19 2.8 44.5 1.0 OE1 A:GLU19 2.8 46.3 1.0 O A:HOH231 3.0 45.8 1.0 CG A:GLU19 4.2 35.0 1.0 HG2 A:GLU19 4.4 42.5 1.0 HG3 A:GLU19 4.6 42.5 1.0

Zinc binding site 4 out of 7 in the Anammox-Specific Acyl Carrier Protein From Kuenenia Stuttgartiensis; Normal Refinement


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Anammox-Specific Acyl Carrier Protein From Kuenenia Stuttgartiensis; Normal Refinement within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn104 b:68.4 occ:1.00 OD2 A:ASP2 2.0 77.8 1.0 CG A:ASP2 3.0 69.8 1.0 OD1 A:ASP2 3.4 83.0 1.0 HG3 A:GLU5 3.4 78.6 1.0 OE2 A:GLU5 3.7 86.2 1.0 HB3 A:GLU4 4.0 57.2 1.0 OE1 A:GLU4 4.0 89.1 1.0 CG A:GLU5 4.2 65.1 1.0 CD A:GLU5 4.2 84.0 1.0 CB A:ASP2 4.4 68.8 1.0 HG2 A:GLU5 4.5 78.6 1.0 HB3 A:ASP2 4.5 83.1 1.0 HB2 A:ASP2 4.6 83.1 1.0 H A:GLU5 4.6 49.0 1.0 CB A:GLU4 4.8 47.2 1.0 HB2 A:GLU4 4.9 57.2 1.0

Zinc binding site 5 out of 7 in the Anammox-Specific Acyl Carrier Protein From Kuenenia Stuttgartiensis; Normal Refinement


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Anammox-Specific Acyl Carrier Protein From Kuenenia Stuttgartiensis; Normal Refinement within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn105 b:97.3 occ:1.00 OD2 A:ASP30 2.2 94.4 1.0 CG A:ASP30 2.9 78.0 1.0 OD1 A:ASP30 3.0 78.1 1.0 HG A:SER71 3.8 65.4 1.0 CB A:ASP30 4.4 61.5 1.0 OG A:SER71 4.6 54.1 1.0 HE A:ARG29 4.6 51.2 1.0 HB3 A:ASP30 4.7 74.3 1.0 HG3 A:ARG29 4.7 60.7 1.0 HB2 A:ASP30 4.7 74.3 1.0 HB3 A:SER71 5.0 66.1 1.0

Zinc binding site 6 out of 7 in the Anammox-Specific Acyl Carrier Protein From Kuenenia Stuttgartiensis; Normal Refinement


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Anammox-Specific Acyl Carrier Protein From Kuenenia Stuttgartiensis; Normal Refinement within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn106 b:104.7 occ:1.00 OD1 A:ASP21 2.5 58.0 1.0 CG A:ASP21 3.5 38.7 1.0 HA A:ASP21 3.6 27.2 1.0 HB2 A:ASP21 3.7 37.1 1.0 CB A:ASP21 4.0 30.5 1.0 CA A:ASP21 4.3 22.2 1.0 H A:GLU22 4.4 28.7 1.0 OD2 A:ASP21 4.7 55.9 1.0 HB3 A:ASP21 4.9 37.1 1.0

Zinc binding site 7 out of 7 in the Anammox-Specific Acyl Carrier Protein From Kuenenia Stuttgartiensis; Normal Refinement


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of Anammox-Specific Acyl Carrier Protein From Kuenenia Stuttgartiensis; Normal Refinement within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn107 b:141.7 occ:1.00 OE1 A:GLN58 2.4 91.7 1.0 OE1 A:GLU52 2.4 125.9 1.0 OE2 A:GLU52 2.5 122.7 1.0 CD A:GLU52 2.7 113.4 1.0 O A:HOH201 3.0 63.0 1.0 CD A:GLN58 3.4 88.5 1.0 H A:ILE59 3.5 68.4 1.0 HE22 A:GLN58 3.5 103.6 1.0 NE2 A:GLN58 3.8 85.9 1.0 O A:ILE59 3.8 57.4 1.0 HA A:GLN58 3.9 67.7 1.0 CG A:GLU52 4.2 93.6 1.0 HB3 A:GLN58 4.3 75.3 1.0 N A:ILE59 4.3 56.6 1.0 HG2 A:GLU52 4.5 112.8 1.0 HD21 A:LEU48 4.6 58.6 1.0 HB3 A:GLU52 4.6 88.8 1.0 HE21 A:GLN58 4.6 103.6 1.0 CG A:GLN58 4.6 72.3 1.0 CA A:GLN58 4.7 56.0 1.0 OE2 A:GLU61 4.7 128.2 1.0 CB A:GLN58 4.7 62.4 1.0 C A:ILE59 4.7 68.2 1.0 HG3 A:GLU52 4.8 112.8 1.0 HD23 A:LEU48 4.9 58.6 1.0 CB A:GLU52 4.9 73.6 1.0

A.Dietl, T.R.M.Barends. Dynamics in An Unusual Acyl Carrier Protein From A Ladderane Lipid-Synthesizing Organism. Proteins 2021.
ISSN: ESSN 1097-0134
PubMed: 34310758
DOI: 10.1002/PROT.26187