Zinc in PDB 7ak5: Cryo-Em Structure of Respiratory Complex I in the Deactive State From Mus Musculus at 3.2 A

All present enzymatic activity of Cryo-Em Structure of Respiratory Complex I in the Deactive State From Mus Musculus at 3.2 A:
7.1.1.2;

The structure of Cryo-Em Structure of Respiratory Complex I in the Deactive State From Mus Musculus at 3.2 A also contains other interesting chemical elements:

Iron

(Fe)

28 atoms

The binding sites of Zinc atom in the Cryo-Em Structure of Respiratory Complex I in the Deactive State From Mus Musculus at 3.2 A (pdb code 7ak5). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Cryo-Em Structure of Respiratory Complex I in the Deactive State From Mus Musculus at 3.2 A, PDB code: 7ak5:

Zinc binding site 1 out of 1 in the Cryo-Em Structure of Respiratory Complex I in the Deactive State From Mus Musculus at 3.2 A


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of Respiratory Complex I in the Deactive State From Mus Musculus at 3.2 A within 5.0Å range: probe atom residue distance (Å) B Occ R:Zn201 b:35.4 occ:1.00 NE2 R:HIS68 2.1 17.2 1.0 SG R:CYS87 2.2 19.3 1.0 SG R:CYS84 2.3 21.7 1.0 SG R:CYS59 2.3 20.9 1.0 CE1 R:HIS68 2.9 17.2 1.0 CD2 R:HIS68 3.1 17.2 1.0 CB R:CYS84 3.3 21.7 1.0 CB R:CYS87 3.3 19.3 1.0 CB R:CYS59 3.4 20.9 1.0 N R:CYS87 3.8 19.3 1.0 ND1 R:HIS68 4.1 17.2 1.0 CA R:CYS87 4.2 19.3 1.0 CG R:HIS68 4.2 17.2 1.0 CB R:TYR86 4.3 16.3 1.0 C R:CYS59 4.3 20.9 1.0 N R:GLY61 4.4 18.4 1.0 N R:ASP60 4.5 19.1 1.0 CA R:CYS59 4.5 20.9 1.0 O R:CYS59 4.6 20.9 1.0 C R:ASP60 4.7 19.1 1.0 CG2 R:VAL71 4.7 19.8 1.0 CA R:GLY61 4.7 18.4 1.0 CA R:CYS84 4.7 21.7 1.0 C R:TYR86 4.8 16.3 1.0 CA R:ASP60 4.9 19.1 1.0 CA R:TYR86 4.9 16.3 1.0 N R:TYR86 4.9 16.3 1.0

Z.Yin, N.Burger, D.Kula-Alwar, D.Aksentijevic, H.R.Bridges, H.Prag, D.Grba, C.Viscomi, A.James, A.Mottahedin, T.Krieg, M.P.Murphy, J.Hirst. Structural Basis For A Complex I Mutation That Blocks Pathological Ros Production To Be Published.
DOI: 10.1038/S41467-021-20942-W