Zinc in PDB 7a9s: Racemic Compound of Rna Duplexes.

The structure of Racemic Compound of Rna Duplexes., PDB code: 7a9s was solved by W.Rypniewski, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	37.20 / 2.29
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	21.193, 26.339, 38.928, 105.04, 97.54, 91.13
R / Rfree (%)	16.9 / 27.4

The binding sites of Zinc atom in the Racemic Compound of Rna Duplexes. (pdb code 7a9s). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 7 binding sites of Zinc where determined in the Racemic Compound of Rna Duplexes., PDB code: 7a9s:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7;

Zinc binding site 1 out of 7 in the Racemic Compound of Rna Duplexes.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Racemic Compound of Rna Duplexes. within 5.0Å range: probe atom residue distance (Å) B Occ K:Zn101 b:29.4 occ:0.60 O K:HOH214 2.0 16.8 1.0 N7 K:G82 2.1 23.3 1.0 O K:HOH204 2.1 19.2 1.0 O K:HOH219 2.1 30.2 1.0 O K:HOH222 2.4 32.1 1.0 O K:HOH203 2.6 26.4 1.0 C8 K:G82 2.9 22.7 1.0 C5 K:G82 3.2 22.4 1.0 O6 K:G82 3.6 23.5 1.0 C6 K:G82 3.7 23.2 1.0 O K:HOH210 3.8 26.6 1.0 O K:HOH217 3.9 27.8 1.0 OP2 K:G82 4.0 25.3 1.0 N9 K:G82 4.1 22.9 1.0 N7 K:G81 4.2 21.2 1.0 C4 K:G82 4.3 23.0 1.0 OP2 K:G81 4.5 34.9 1.0 C8 K:G81 4.5 22.6 1.0 O6 K:G83 4.6 26.7 1.0 C5 K:G81 4.6 21.4 1.0 O5' K:G82 4.6 24.2 1.0 N7 K:G83 4.7 25.9 1.0 P K:G82 5.0 25.0 1.0

Zinc binding site 2 out of 7 in the Racemic Compound of Rna Duplexes.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Racemic Compound of Rna Duplexes. within 5.0Å range: probe atom residue distance (Å) B Occ K:Zn102 b:67.6 occ:0.80 O K:HOH208 1.9 47.7 1.0 O K:HOH201 1.9 34.3 1.0 O K:HOH205 2.1 28.9 1.0 O K:HOH223 2.7 34.6 1.0 O K:HOH212 3.5 36.5 1.0 N7 K:G85 3.5 26.4 1.0 O M:HOH205 3.6 29.5 1.0 C8 K:G85 4.3 24.9 1.0 O6 K:G86 4.4 17.9 1.0 N7 K:G86 4.4 18.8 1.0 C5 K:G85 4.4 23.7 1.0 O6 K:G85 4.5 28.4 1.0 OP2 K:G85 4.7 38.6 1.0 C6 K:G85 4.8 24.7 1.0 O2' M:0C79 4.9 37.7 1.0 O2 M:0C79 4.9 19.0 1.0

Zinc binding site 3 out of 7 in the Racemic Compound of Rna Duplexes.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Racemic Compound of Rna Duplexes. within 5.0Å range: probe atom residue distance (Å) B Occ L:Zn101 b:58.1 occ:1.00 O L:HOH209 2.0 36.2 1.0 O L:HOH206 2.0 39.4 1.0 O L:HOH210 2.1 39.3 1.0 O L:HOH201 2.1 43.0 1.0 O L:HOH224 2.6 29.5 1.0 O L:HOH203 2.7 28.2 1.0 N7 L:G96 3.4 24.8 1.0 O L:HOH217 3.8 22.6 1.0 C8 L:G96 4.1 24.4 1.0 N7 L:G97 4.2 18.7 1.0 O6 L:G97 4.3 17.9 1.0 OP2 L:G96 4.4 28.6 1.0 C5 L:G96 4.5 23.7 1.0 O6 L:G96 4.7 21.5 1.0 C5 L:G97 5.0 18.6 1.0 C6 L:G96 5.0 23.1 1.0 C4 L:U95 5.0 24.1 1.0

Zinc binding site 4 out of 7 in the Racemic Compound of Rna Duplexes.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Racemic Compound of Rna Duplexes. within 5.0Å range: probe atom residue distance (Å) B Occ L:Zn102 b:54.0 occ:0.50 O L:HOH223 2.7 38.1 1.0 OP2 L:U95 3.6 23.6 1.0 OP1 L:C94 3.7 23.4 1.0 OP1 L:U95 4.2 28.0 1.0 P L:U95 4.4 27.6 1.0 O L:HOH207 4.4 22.9 1.0 P L:C94 4.8 24.7 1.0 O5' L:C94 5.0 23.6 1.0

Zinc binding site 5 out of 7 in the Racemic Compound of Rna Duplexes.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Racemic Compound of Rna Duplexes. within 5.0Å range: probe atom residue distance (Å) B Occ M:Zn101 b:43.5 occ:0.60 O M:HOH203 1.9 36.6 1.0 O M:HOH212 2.1 34.2 1.0 O M:HOH221 2.1 33.1 1.0 O M:HOH204 2.2 25.4 1.0 N7 M:0G82 2.2 18.6 1.0 O M:HOH229 2.3 35.7 1.0 C8 M:0G82 3.0 18.1 1.0 C5 M:0G82 3.3 18.0 1.0 O6 M:0G82 3.7 20.0 1.0 OP1 M:0G82 3.7 27.1 1.0 O M:HOH218 3.8 26.8 1.0 C6 M:0G82 3.8 19.6 1.0 O M:HOH224 4.1 31.1 1.0 N9 M:0G82 4.3 19.3 1.0 C4 M:0G82 4.4 18.3 1.0 O6 M:0G83 4.5 21.3 1.0 N7 M:0G81 4.6 20.3 1.0 O5' M:0G82 4.7 22.6 1.0 N7 M:0G83 4.7 18.5 1.0 C8 M:0G81 4.8 19.7 1.0 OP1 M:0G81 4.9 31.2 1.0 P M:0G82 4.9 24.5 1.0 C5 M:0G81 4.9 19.1 1.0

Zinc binding site 6 out of 7 in the Racemic Compound of Rna Duplexes.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Racemic Compound of Rna Duplexes. within 5.0Å range: probe atom residue distance (Å) B Occ M:Zn102 b:48.8 occ:0.80 O M:HOH230 1.9 34.5 1.0 O M:HOH210 2.0 48.6 1.0 O M:HOH216 2.3 28.9 1.0 O M:HOH201 2.5 44.8 1.0 N7 M:0G85 2.7 25.0 1.0 C8 M:0G85 3.5 24.8 1.0 C5 M:0G85 3.8 22.5 1.0 OP1 M:0G85 4.0 25.8 1.0 O6 M:0G85 4.0 24.2 1.0 O M:HOH202 4.2 31.1 1.0 N7 M:0G86 4.3 20.2 1.0 O6 M:0G86 4.3 18.3 1.0 C6 M:0G85 4.3 23.2 1.0 C5 M:0C84 4.4 24.6 1.0 C4 M:0C84 4.4 23.4 1.0 N4 M:0C84 4.5 22.6 1.0 N9 M:0G85 4.7 24.8 1.0 O M:HOH228 4.8 28.6 1.0 C6 M:0C84 4.9 24.1 1.0 C4 M:0G85 4.9 21.3 1.0 N3 M:0C84 4.9 21.8 1.0

Zinc binding site 7 out of 7 in the Racemic Compound of Rna Duplexes.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of Racemic Compound of Rna Duplexes. within 5.0Å range: probe atom residue distance (Å) B Occ N:Zn101 b:59.7 occ:1.00 O N:HOH203 2.1 34.5 1.0 O L:HOH222 2.2 31.3 1.0 O N:HOH212 2.2 43.8 1.0 O L:HOH221 2.3 24.9 1.0 O N:HOH221 2.4 60.0 1.0 O N:HOH207 2.6 46.0 1.0 N7 N:0G96 3.7 25.0 1.0 N7 N:0G97 4.2 18.6 1.0 O6 N:0G97 4.3 17.9 1.0 C8 N:0G96 4.4 25.8 1.0 OP1 N:0G96 4.4 39.1 1.0 C5 N:0U95 4.6 22.4 1.0 C4 N:0U95 4.7 21.3 1.0 O4 N:0U95 4.7 19.9 1.0 C5 N:0G96 4.7 23.2 1.0 O6 N:0G96 4.9 25.4 1.0 C5 N:0G97 5.0 18.9 1.0 C6 N:0G97 5.0 18.5 1.0

W.Rypniewski, A.Kiliszek, L.Blaszczyk, M.Bejger. Racemic Compound of Rna Duplexes. To Be Published.