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Zinc in PDB 6yxg: Cryogenic Human Adiponectin Receptor 2 (ADIPOR2) with Tb-XO4 Ligand Determined By Serial Crystallography (Ssx) Using Crystaldirect

Protein crystallography data

The structure of Cryogenic Human Adiponectin Receptor 2 (ADIPOR2) with Tb-XO4 Ligand Determined By Serial Crystallography (Ssx) Using Crystaldirect, PDB code: 6yxg was solved by R.D.Healey, S.Basu, A.S.Humm, C.Leyrat, F.Dupeux, A.Pica, S.Granier, J.A.Marquez, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.00 / 3.01
Space group P 21 2 21
Cell size a, b, c (Å), α, β, γ (°) 74.61, 100.69, 110.51, 90, 90, 90
R / Rfree (%) 21.3 / 25.2

Other elements in 6yxg:

The structure of Cryogenic Human Adiponectin Receptor 2 (ADIPOR2) with Tb-XO4 Ligand Determined By Serial Crystallography (Ssx) Using Crystaldirect also contains other interesting chemical elements:

Terbium (Tb) 2 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Cryogenic Human Adiponectin Receptor 2 (ADIPOR2) with Tb-XO4 Ligand Determined By Serial Crystallography (Ssx) Using Crystaldirect (pdb code 6yxg). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Cryogenic Human Adiponectin Receptor 2 (ADIPOR2) with Tb-XO4 Ligand Determined By Serial Crystallography (Ssx) Using Crystaldirect, PDB code: 6yxg:

Zinc binding site 1 out of 1 in 6yxg

Go back to Zinc Binding Sites List in 6yxg
Zinc binding site 1 out of 1 in the Cryogenic Human Adiponectin Receptor 2 (ADIPOR2) with Tb-XO4 Ligand Determined By Serial Crystallography (Ssx) Using Crystaldirect


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryogenic Human Adiponectin Receptor 2 (ADIPOR2) with Tb-XO4 Ligand Determined By Serial Crystallography (Ssx) Using Crystaldirect within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn401

b:66.4
occ:1.00
NE2 A:HIS348 2.2 70.7 1.0
NE2 A:HIS202 2.2 70.9 1.0
NE2 A:HIS352 2.3 71.9 1.0
O2 A:OLA402 2.5 72.8 1.0
CD2 A:HIS348 3.0 69.8 1.0
CE1 A:HIS202 3.1 70.7 1.0
CE1 A:HIS352 3.2 71.8 1.0
O1 A:OLA402 3.3 72.2 1.0
C1 A:OLA402 3.3 72.6 1.0
CD2 A:HIS202 3.3 70.1 1.0
CE1 A:HIS348 3.3 70.8 1.0
CD2 A:HIS352 3.3 70.9 1.0
OD2 A:ASP219 3.6 71.8 1.0
OG A:SER198 3.7 68.3 1.0
O A:HOH504 4.2 67.3 1.0
CG A:HIS348 4.2 68.9 1.0
OD1 A:ASP219 4.3 74.2 1.0
ND1 A:HIS202 4.3 70.1 1.0
CG A:HIS202 4.4 69.0 1.0
ND1 A:HIS348 4.4 70.4 1.0
CG A:ASP219 4.4 72.9 1.0
ND1 A:HIS352 4.4 71.5 1.0
CG A:HIS352 4.4 70.4 1.0
C2 A:OLA402 4.7 72.4 1.0
CB A:SER198 4.9 68.3 1.0

Reference:

R.D.Healey, S.Basu, A.S.Humm, C.Leyrat, F.Dupeux, A.Pica, S.Granier, J.A.Marquez. Rapid, Automated Serial Crystallographic Analysis of Membrane Proteins Through Crystaldirect To Be Published.
Page generated: Mon Jul 12 16:45:23 2021

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