Zinc in PDB 6ymb: Microed Structure of Human Carbonic Anhydrase II

Enzymatic activity of Microed Structure of Human Carbonic Anhydrase II

All present enzymatic activity of Microed Structure of Human Carbonic Anhydrase II:
4.2.1.1;

Zinc Binding Sites:

The binding sites of Zinc atom in the Microed Structure of Human Carbonic Anhydrase II (pdb code 6ymb). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Microed Structure of Human Carbonic Anhydrase II, PDB code: 6ymb:

Zinc binding site 1 out of 1 in 6ymb

Go back to Zinc Binding Sites List in 6ymb
Zinc binding site 1 out of 1 in the Microed Structure of Human Carbonic Anhydrase II


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Microed Structure of Human Carbonic Anhydrase II within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn301

b:24.1
occ:1.00
NE2 A:HIS94 2.0 25.0 1.0
ND1 A:HIS119 2.0 24.8 1.0
NE2 A:HIS96 2.0 25.2 1.0
O A:HOH410 2.6 24.7 1.0
O A:HOH405 2.9 24.7 1.0
CD2 A:HIS94 2.9 25.0 1.0
CE1 A:HIS119 2.9 24.8 1.0
CD2 A:HIS96 2.9 25.2 1.0
CE1 A:HIS94 3.1 25.0 1.0
CE1 A:HIS96 3.1 25.2 1.0
CG A:HIS119 3.1 24.8 1.0
CB A:HIS119 3.5 24.8 1.0
OG1 A:THR199 3.6 25.3 1.0
OE1 A:GLU106 3.8 24.9 1.0
NE2 A:HIS119 4.1 24.8 1.0
CG A:HIS94 4.1 25.0 1.0
CG A:HIS96 4.1 25.2 1.0
ND1 A:HIS94 4.1 25.0 1.0
ND1 A:HIS96 4.1 25.2 1.0
CD2 A:HIS119 4.2 24.8 1.0
CD A:GLU106 4.6 24.9 1.0
CH2 A:TRP209 4.9 24.5 1.0
OE2 A:GLU106 5.0 24.9 1.0
CB A:THR199 5.0 25.3 1.0
CA A:HIS119 5.0 24.8 1.0

Reference:

M.T.B.Clabbers, S.Z.Fisher, M.Coincon, X.Zou, H.Xu. Visualizing Drug Binding Interactions Using Microcrystal Electron Diffraction. Commun Biol V. 3 417 2020.
ISSN: ESSN 2399-3642
PubMed: 32737395
DOI: 10.1038/S42003-020-01155-1
Page generated: Wed Dec 16 13:17:59 2020

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