Zinc in PDB 6yie: Structure of A Borealin-Incenp-Survivin Complex

The structure of Structure of A Borealin-Incenp-Survivin Complex, PDB code: 6yie was solved by M.Serena, P.R.Elliott, F.A.Barr, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	66.70 / 3.49
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	59.536, 78.824, 125.173, 90.00, 90.00, 90.00
R / Rfree (%)	26.9 / 32.4

The binding sites of Zinc atom in the Structure of A Borealin-Incenp-Survivin Complex (pdb code 6yie). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Structure of A Borealin-Incenp-Survivin Complex, PDB code: 6yie:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Structure of A Borealin-Incenp-Survivin Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of A Borealin-Incenp-Survivin Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn201 b:30.5 occ:1.00 HE2 A:HIS77 1.6 88.9 1.0 SG A:CYS60 2.2 26.0 1.0 SG A:CYS57 2.3 26.2 1.0 SG A:CYS84 2.3 28.5 1.0 NE2 A:HIS77 2.3 74.1 1.0 H A:CYS60 2.8 33.0 1.0 HB3 A:CYS57 2.9 31.1 1.0 HE1 A:HIS77 2.9 88.4 1.0 CB A:CYS57 3.0 25.9 1.0 CE1 A:HIS77 3.0 73.7 1.0 HB2 A:CYS57 3.0 31.1 1.0 HB2 A:CYS84 3.1 34.1 1.0 CB A:CYS84 3.2 28.4 1.0 HB3 A:CYS60 3.2 32.0 1.0 CB A:CYS60 3.3 26.7 1.0 HB3 A:CYS84 3.4 34.1 1.0 CD2 A:HIS77 3.5 72.8 1.0 N A:CYS60 3.6 27.5 1.0 HB3 A:PHE59 3.7 47.9 1.0 HD2 A:HIS77 3.8 87.4 1.0 CA A:CYS60 4.1 27.3 1.0 HB3 A:PHE86 4.1 33.3 1.0 HB2 A:CYS60 4.1 32.0 1.0 ND1 A:HIS77 4.2 73.6 1.0 H A:PHE59 4.2 47.9 1.0 HG A:SER81 4.3 65.2 1.0 H A:PHE61 4.4 59.5 1.0 OG A:SER81 4.4 54.3 1.0 CA A:CYS57 4.4 26.3 1.0 CG A:HIS77 4.4 71.7 1.0 HB3 A:SER81 4.5 60.9 1.0 H A:LYS62 4.5 59.0 1.0 HD1 A:PHE59 4.6 48.8 1.0 CB A:PHE59 4.6 39.9 1.0 HB3 A:LYS62 4.6 54.6 1.0 HB2 A:PHE86 4.6 33.3 1.0 CA A:CYS84 4.7 29.1 1.0 C A:PHE59 4.7 40.0 1.0 HA A:CYS57 4.8 31.6 1.0 CB A:PHE86 4.8 27.8 1.0 HA A:CYS60 4.8 32.8 1.0 HA A:CYS84 4.8 35.0 1.0 N A:PHE61 4.9 49.6 1.0 H A:PHE86 4.9 34.2 1.0 C A:CYS60 4.9 38.5 1.0 N A:PHE59 4.9 39.9 1.0 C A:CYS57 4.9 71.6 1.0 CB A:SER81 5.0 50.7 1.0 CA A:PHE59 5.0 40.2 1.0

Zinc binding site 2 out of 2 in the Structure of A Borealin-Incenp-Survivin Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of A Borealin-Incenp-Survivin Complex within 5.0Å range: probe atom residue distance (Å) B Occ D:Zn201 b:23.0 occ:1.00 HE2 D:HIS77 2.0 68.0 1.0 SG D:CYS57 2.2 54.2 1.0 SG D:CYS84 2.2 61.1 1.0 SG D:CYS60 2.4 71.8 1.0 H D:CYS60 2.5 78.5 1.0 HB2 D:CYS84 2.6 65.9 1.0 NE2 D:HIS77 2.7 56.6 1.0 HB3 D:CYS60 2.9 80.7 1.0 CB D:CYS84 2.9 54.9 1.0 HE1 D:HIS77 3.0 68.6 1.0 CB D:CYS60 3.1 67.3 1.0 HB3 D:CYS57 3.2 65.4 1.0 CE1 D:HIS77 3.2 57.2 1.0 N D:CYS60 3.3 65.5 1.0 CB D:CYS57 3.3 54.5 1.0 HB3 D:PHE59 3.3 86.0 1.0 HB3 D:CYS84 3.4 65.9 1.0 HB2 D:CYS57 3.6 65.4 1.0 CA D:CYS60 3.8 66.1 1.0 H D:PHE59 3.8 86.8 1.0 HB3 D:PHE86 3.9 65.6 1.0 HB2 D:CYS60 4.0 80.7 1.0 CD2 D:HIS77 4.0 57.6 1.0 HG D:SER81 4.1 98.8 1.0 OG D:SER81 4.1 82.3 1.0 CB D:PHE59 4.2 71.7 1.0 CA D:CYS84 4.2 54.5 1.0 HA D:CYS84 4.3 65.4 1.0 H D:PHE61 4.3 78.8 1.0 C D:PHE59 4.3 76.6 1.0 HD2 D:HIS77 4.4 69.1 1.0 ND1 D:HIS77 4.5 61.6 1.0 HA D:CYS60 4.5 79.3 1.0 N D:PHE59 4.5 72.4 1.0 HD1 D:PHE59 4.6 84.2 1.0 CA D:PHE59 4.6 73.5 1.0 H D:LYS62 4.6 77.1 1.0 CA D:CYS57 4.6 54.1 1.0 HB2 D:PHE59 4.7 86.0 1.0 C D:CYS60 4.7 63.4 1.0 HB3 D:SER81 4.7 97.5 1.0 N D:PHE61 4.8 65.7 1.0 CB D:PHE86 4.8 54.7 1.0 HB2 D:PHE86 4.8 65.6 1.0 H D:PHE86 4.8 65.4 1.0 H D:CYS84 4.8 66.0 1.0 C D:CYS57 4.9 53.5 1.0 CG D:HIS77 4.9 61.3 1.0 CB D:SER81 4.9 81.3 1.0 HA D:CYS57 5.0 65.0 1.0

M.Serena, R.N.Bastos, P.R.Elliott, F.A.Barr. Molecular Basis of MKLP2-Dependent Aurora B Transport From Chromatin to the Anaphase Central Spindle. J.Cell Biol. V. 219 2020.
ISSN: ESSN 1540-8140
PubMed: 32356865
DOI: 10.1083/JCB.201910059