Zinc in PDB 6yhs: Acinetobacter Baumannii Ribosome-Amikacin Complex - 50S Subunit

The structure of Acinetobacter Baumannii Ribosome-Amikacin Complex - 50S Subunit also contains other interesting chemical elements:

Magnesium

(Mg)

160 atoms

The binding sites of Zinc atom in the Acinetobacter Baumannii Ribosome-Amikacin Complex - 50S Subunit (pdb code 6yhs). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Acinetobacter Baumannii Ribosome-Amikacin Complex - 50S Subunit, PDB code: 6yhs:

Zinc binding site 1 out of 1 in the Acinetobacter Baumannii Ribosome-Amikacin Complex - 50S Subunit


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Acinetobacter Baumannii Ribosome-Amikacin Complex - 50S Subunit within 5.0Å range: probe atom residue distance (Å) B Occ b:Zn101 b:58.5 occ:1.00 SG b:CYS11 2.4 24.0 1.0 SG b:CYS14 2.4 25.6 1.0 ND1 b:HIS33 2.4 17.8 1.0 SG b:CYS27 2.6 23.7 1.0 CB b:CYS27 3.1 23.7 1.0 CE1 b:HIS33 3.3 17.8 1.0 CG b:HIS33 3.4 17.8 1.0 CB b:HIS33 3.6 17.8 1.0 CB b:CYS11 3.7 24.0 1.0 CB b:CYS14 3.7 25.6 1.0 N b:CYS14 3.8 25.6 1.0 CA b:CYS14 4.0 25.6 1.0 N b:CYS11 4.0 24.0 1.0 C b:SER13 4.1 24.6 1.0 O b:SER13 4.3 24.6 1.0 CA b:CYS11 4.4 24.0 1.0 CA b:CYS27 4.4 23.7 1.0 NE2 b:HIS33 4.4 17.8 1.0 CD2 b:HIS33 4.5 17.8 1.0 N b:SER13 4.7 24.6 1.0 CB b:SER13 4.7 24.6 1.0 CA b:SER13 4.7 24.6 1.0 C b:CYS11 4.8 24.0 1.0 CB b:ILE10 4.9 20.8 1.0 CG b:GLU30 4.9 21.8 1.0 O b:CYS11 4.9 24.0 1.0

D.Nicholson, T.A.Edwards, A.J.O'neill, N.A.Ranson. Structure of the 70S Ribosome From the Human Pathogen Acinetobacter Baumannii in Complex with Clinically Relevant Antibiotics. Structure V. 28 1087 2020.
ISSN: ISSN 0969-2126
PubMed: 32857965
DOI: 10.1016/J.STR.2020.08.004